PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01576.1.p
Common NameEUGRSUZ_I01576, LOC104419086
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 253aa    MW: 26713.7 Da    PI: 4.6278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01576.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-192876355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Eucgr.I01576.1.p 28 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 76
                      56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-342790IPR001471AP2/ERF domain
CDDcd000182.83E-292783No hitNo description
PROSITE profilePS5103220.7192784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-292884IPR001471AP2/ERF domain
PRINTSPR003673.0E-82839IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-212885IPR016177DNA-binding domain
PfamPF008475.3E-123076IPR001471AP2/ERF domain
PRINTSPR003673.0E-85066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSSPSSSSKG NKKQPPAGES SAAGGGRFLG VRRRPWGRYA AEIRDPSTKE RHWLGTFDTA  60
EEAALAYDRA ARSMRGSRAR TNFVYSDLPA GSSVTSILSP DEAQQQNFSP IFANSAPRPD  120
PAPQLDAGGY AESAWSTSAY YSQQADAAPY GGGGGGAYSQ CHYDNVELPP LPSDMSGYSG  180
YSGSDTSSYS YGDTVPSNCY SDFHDPAAAS GNGPSFGFDS TEEYVHSPLF SRMPPVSDSV  240
PDSFNLGGSY FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192383162ATERF1
3gcc_A2e-192383162ATERF1
5wx9_A3e-191883571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01576.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7247164e-42KT724716.1 Triticum turgidum AP2/ERF transcription factor (NILbh-1) gene, NILbh-1-2AS allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028918.10.0PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6446e-56LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A059AQP31e-180A0A059AQP3_EUCGR; Uncharacterized protein
STRINGXP_010028918.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-36ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]