PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01547.2.p
Common NameEUGRSUZ_I01547, LOC104419060
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 748aa    MW: 85331.3 Da    PI: 6.5466
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01547.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.85.7e-3186177291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+  +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++  HnHel+p
  Eucgr.I01547.2.p  86 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVRAHNHELVP 177
                       9***************************************998888545677889***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2986177IPR004330FAR1 DNA binding domain
PfamPF105515.2E-32298390IPR018289MULE transposase domain
PfamPF044341.7E-12566612IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.239578614IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9589616IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MENEVIEFDI GLGGGVGSSG REVDDDGVDI EHPVDDEDMI DSPQNISGGG GFGGGSGEIY  60
LPEGDLLDLE PYEGMEFESE EAAKAFYNSY ARRVGFSTRV SSSRRSRRDG AIIQRQFVCA  120
KEGFRNLNEK RTKDREIKRP RTITRVGCKA SLSVKMQDSG KWVVSGFVRA HNHELVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGLGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QRSLEGDIQL LLDYLKQMHA ENANFFYAVQ NDEDQSMCNV VWADSRSRMN YTYFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFMINESESS FVWLFKTWLM AMSGRPPVSI  360
TTDHDTVVGS AIAQVFPETR HRFCKWHIFK KCQEKLSQVF LEHPTFEADF HKCVNLTESV  420
DEFESCWLAL IDRYDLRDHE WLQTIYSARR HWVPVYLRDT FFAEMSITQR SDSMNSYFDG  480
YINASTSLNQ FFKLYEKALE SRNEKEVKAD YDTMNTSPVL KTPSPMEKQA SEFYTRKLFI  540
RFQEELVGTL TFMASKIDDD SEIIAYQVAK YGEDHKSYDV KFNVLEMRAT CSCQMFEFSG  600
LLCRHVLAVF RVTNVLTLPP HFILKRWTRN AKSSVNLEEH ASGLYTNYLE SHTVRYNTLR  660
HEAFKFVDEG AKSLDVYEVA MSALQDGAKK VALASKNEGR AVMVNGRSRD DLMRHRSSYN  720
LSTGRSHMTA GQSLSEVVIM LTECMCS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01547.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028879.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A059ANX10.0A0A059ANX1_EUCGR; Uncharacterized protein
STRINGXP_010028878.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]