PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01218.1.p | ||||||||
Common Name | EUGRSUZ_I01218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 375aa MW: 41694 Da PI: 5.211 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.6e-19 | 18 | 107 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k++++s+v++ +l lp +f++ h+ +++++t+tlede+g ++ v++i++k+ l++GWk+F +a +L egD++vF+l++ s f + Eucgr.I01218.1.p 18 FLKTMVRSNVTTGFWLHLPMPFCKLHM--PRNNITVTLEDENGDEYPVNYIVDKTA----LSAGWKKFSSARELMEGDVLVFQLVRASVF--K 102 89*********************9997..56889****************888887....*************************99999..8 PP EEEE- CS B3 94 vkvfr 98 v+++r Eucgr.I01218.1.p 103 VHIVR 107 88876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-24 | 13 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-27 | 16 | 107 | No hit | No description |
SMART | SM01019 | 7.4E-22 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-17 | 18 | 108 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.775 | 18 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MERAEDFRAN LPAEIPSFLK TMVRSNVTTG FWLHLPMPFC KLHMPRNNIT VTLEDENGDE 60 YPVNYIVDKT ALSAGWKKFS SARELMEGDV LVFQLVRASV FKVHIVRGNN SQGVFGLDAS 120 RKQNDSENRM DKEVIPNEKT PSSGPVSQDV SPDNAQSKSL MVLDTNPPCT PDQPGKLGDE 180 IGPDATHGTR LSNSISAIDC GEATSNGSLT VLVSGTAIDS DLSEYQRTRY LELCSSQNGF 240 LHDNLLKSIN YKLAAEMISE TVNIADAIKA SNLSTSRADL EMWDKTLEGF ELLGMKVGFL 300 RARLDQIKNV ASELERYRDA ENKQAAVQEE MRTVQVRLSK LKKLKKRLDA DIESLKTNAE 360 RHEHVFQEEA SAPW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 347 | LKKLKKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01218.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028536.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100 | ||||
Refseq | XP_018718479.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A059AMR8 | 0.0 | A0A059AMR8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010028536.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16717 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01218.1.p |