PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01211.1.p

Common Name

EUGRSUZ_I01211

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 348aa MW: 40529.1 Da PI: 9.9514

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01211.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.2e-13	32	111	15	99
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l++p +f e + ++ + t++++ +sg++W kl +k g+ +v +GW++F ++n L +f++F +dg++ f +v+vf+ Eucgr.I01211.1.p 32 NLRIPSEFSELYHHE--LPDTVIFKGPSGNEWPAKL--QKDIGSvCVQDDGWQNFYRDNALGNSEFLIFWYDGKKYF--NVQVFDP 111 599***9988744..888************..77777768888********************998888..9999985 PP
2	B3	66.2	4.8e-21	250	340	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + + +s v k ++l +p kfa+eh + + + ++l+d +g++W+v + +++r+++++GW+ F +n+Lk gD+++F++ r+++e v Eucgr.I01211.1.p 250 MSYMRRSTVEKAKLLPVPSKFAKEHFLW--RRTNIVLRDAEGQTWKVAH--HCNGKRHYFSRGWRAFLYDNELKIGDVCIFEV--RNKKEVQV 336 5667889999*************877..4457***********..7777889**********************5..36666788 PP EEE- CS B3 95 kvfr 98 +++r Eucgr.I01211.1.p 337 HIYR 340 8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.9E-17	15	113	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	6.9E-10	25	112	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.73E-17	25	112	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.0E-10	32	110	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.884	33	112	IPR003340	B3 DNA binding domain
CDD	cd10017	9.46E-11	33	110	No hit	No description
Gene3D	G3DSA:2.40.330.10	8.1E-27	242	340	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-26	242	341	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.14E-20	247	340	No hit	No description
Pfam	PF02362	2.8E-18	249	340	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-9	249	342	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.552	249	342	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MENARARATM SWVRDERDSF CQLIFQKEPK PNLRIPSEFS ELYHHELPDT VIFKGPSGNE 60 WPAKLQKDIG SVCVQDDGWQ NFYRDNALGN SEFLIFWYDG KKYFNVQVFD PTGVERLNVD 120 PSKHRPRGGP RKHPVGSQNI PLSKSPNSHG KLNPELEQNR LEKIQVEERL SELKEEGKDL 180 PDVRMSSDPG KHKNKNKQRQ VKAEKIAPHF PICRSRLRCR HLEKNASTSE ENARLEAVKE 240 TFTSDFPFFM SYMRRSTVEK AKLLPVPSKF AKEHFLWRRT NIVLRDAEGQ TWKVAHHCNG 300 KRHYFSRGWR AFLYDNELKI GDVCIFEVRN KKEVQVHIYR LPGTSAI*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MENARARATM SWVRDERDSF CQLIFQKEPK PNLRIPSEFS ELYHHELPDT VIFKGPSGNE  60
WPAKLQKDIG SVCVQDDGWQ NFYRDNALGN SEFLIFWYDG KKYFNVQVFD PTGVERLNVD  120
PSKHRPRGGP RKHPVGSQNI PLSKSPNSHG KLNPELEQNR LEKIQVEERL SELKEEGKDL  180
PDVRMSSDPG KHKNKNKQRQ VKAEKIAPHF PICRSRLRCR HLEKNASTSE ENARLEAVKE  240
TFTSDFPFFM SYMRRSTVEK AKLLPVPSKF AKEHFLWRRT NIVLRDAEGQ TWKVAHHCNG  300
KRHYFSRGWR AFLYDNELKI GDVCIFEVRN KKEVQVHIYR LPGTSAI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01211.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030658.2	0.0	PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBL	A0A059APE4	0.0	A0A059APE4_EUCGR; Uncharacterized protein
STRING	XP_010030658.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20656	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	7e-19	B3 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.I01211.1.p