PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01210.1.p
Common NameEUGRSUZ_I01210
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 297aa    MW: 34220.7 Da    PI: 10.5277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-153791799
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +p kfa+ ++  +e +  ++l+ +sg +W+ kl  rk   + ++ +GW+eF  +n L  ++f++F+++g+++f   v +f+ 
  Eucgr.I01210.1.p  3 KIPPKFARLFS--EELPHRVILKGPSGGKWNAKL--RKDNAGLYIHDGWREFHMDNSLGNKEFLLFEYNGKRSF--EVDIFDP 79
                      59*****8886..457889***************..999999**************************998888..9999885 PP
2B371.21.3e-222082901199
                       HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        k ++l++p+ fa++h  ++     +++l++++g++W+v +    +++r+++++GW  F ++n+L +gD++vF+l++++ef  +v++fr+
  Eucgr.I01210.1.p 208 EKAKMLYIPRAFAQAHcPLE---RADIVLRNLEGNTWNVVC--VINKNRHFFSGGWPAFIQDNKLGTGDICVFELISSKEF--RVTIFRS 290
                       56688***********6444...458***************..788888**************************998888..9**9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.607180IPR003340B3 DNA binding domain
SMARTSM010199.2E-9180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-18380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-17380IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-13378IPR003340B3 DNA binding domain
CDDcd100178.88E-15478No hitNo description
Gene3DG3DSA:2.40.330.106.0E-27190290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-27192290IPR015300DNA-binding pseudobarrel domain
CDDcd100176.81E-22196289No hitNo description
PROSITE profilePS5086316.158198291IPR003340B3 DNA binding domain
SMARTSM010192.5E-20201291IPR003340B3 DNA binding domain
PfamPF023624.0E-21203290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQKIPPKFAR LFSEELPHRV ILKGPSGGKW NAKLRKDNAG LYIHDGWREF HMDNSLGNKE  60
FLLFEYNGKR SFEVDIFDPT GLVRIDVPVT EGTETNLHNG KRPRGRPRKC PVVSQKTYLK  120
SQDKQNLKEE MDLRAIITSL EPRKRKQKKK LGKLTGGFPV SRSRFRCCSI EKNASSSEVN  180
ARLRAVEEKM FASKFPYFMT YMKMFSLEKA KMLYIPRAFA QAHCPLERAD IVLRNLEGNT  240
WNVVCVINKN RHFFSGGWPA FIQDNKLGTG DICVFELISS KEFRVTIFRS PKTLHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028531.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_018717742.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_018717743.10.0PREDICTED: B3 domain-containing protein Os01g0723500
TrEMBLA0A059AND70.0A0A059AND7_EUCGR; Uncharacterized protein
STRINGXP_010028531.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2065625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-16B3 family protein