PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00583.1.p | ||||||||
Common Name | EUGRSUZ_I00583, LOC104420300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 27619.8 Da PI: 5.4199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.3 | 1.2e-39 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p GfrF Pt+eel+++yL++++ g k el++vi+ +di+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r++++gyWkatg+ Eucgr.I00583.1.p 5 PTGFRFCPTEEELISFYLHNQLGGLKqDELHRVIPVLDIFNTEPWNLPQlageLCREDREQWFFFAPLQEREARGGRPSRSMATGYWKATGSP 97 89*********************9993445667***************656654445677********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kk+++fy g+ p+g+kt+W ++eyr+ Eucgr.I00583.1.p 98 GYVYSSDNKVIGVKKSMIFYMGKPPTGRKTHWKLNEYRA 136 *************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-42 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.137 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-19 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MEKYPTGFRF CPTEEELISF YLHNQLGGLK QDELHRVIPV LDIFNTEPWN LPQLAGELCR 60 EDREQWFFFA PLQEREARGG RPSRSMATGY WKATGSPGYV YSSDNKVIGV KKSMIFYMGK 120 PPTGRKTHWK LNEYRAIELS PTNLDSTSSN ISIPELRREF ALCRVYVVSG RSRAFDRRRL 180 EAVARETTIQ GSDNTASSEG GHEGGGCADA SSSEAVAANA GSSHQWEMAS LEDPIWDWEQ 240 LDWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-30 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-30 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-30 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-30 | 5 | 166 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-30 | 5 | 166 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-30 | 5 | 166 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-30 | 5 | 166 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00583.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010030466.1 | 0.0 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 8e-87 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AML1 | 0.0 | A0A059AML1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010030466.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-89 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00583.1.p |
Entrez Gene | 104420300 |
Publications ? help Back to Top | |||
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