PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00406.1.p | ||||||||
Common Name | EUGRSUZ_I00406 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 200aa MW: 23008.4 Da PI: 8.7499 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51 | 2.6e-16 | 20 | 111 | 2 | 100 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fk+ sd+l+sg l++pk+f++++g+ + +l l+ W v+l +k++gr+++ kGW++F + ++ g +vF+l+g s f +v Eucgr.I00406.1.p 20 FKII-LSDTLQSGKLIIPKRFVAKYGNR--LPNQLLLKVAGDGNWPVEL--EKCDGRVWICKGWRNFMDYYSIDHGHLIVFRLEGASFF--HV 105 4444.59******************966..7889***************..********************************998888..** PP EEE-SS CS B3 95 kvfrks 100 +f+ks Eucgr.I00406.1.p 106 LIFDKS 111 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-24 | 15 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-23 | 15 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.88E-19 | 17 | 109 | No hit | No description |
PROSITE profile | PS50863 | 12.915 | 18 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-14 | 19 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-12 | 20 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MTNVSYSWKR YEPLESPHFF KIILSDTLQS GKLIIPKRFV AKYGNRLPNQ LLLKVAGDGN 60 WPVELEKCDG RVWICKGWRN FMDYYSIDHG HLIVFRLEGA SFFHVLIFDK SATEIEYPQK 120 PVAPEKLLDP EVVEIDDVST ELGEHIISPR ERRELKSPLW SASPEGKGSH SGDRRTLKLK 180 KNMRAYCSSR DYGGMIYFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00406.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718145.1 | 1e-142 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A059AKX0 | 1e-146 | A0A059AKX0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066143.1 | 9e-41 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00406.1.p |