PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00403.1.p
Common NameEUGRSUZ_I00403
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 292aa    MW: 32737 Da    PI: 10.0704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00403.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.47.9e-112262873799
                       EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +    +  sW vkl   k++g    l++GW  F++a  L+egD++v++l++ s + l v++fr+
  Eucgr.I00403.1.p 226 VTLKHKKDSWPVKL--IKYRGDlGKLSQGWFAFARATSLCEGDVCVLELTKPSPTVLEVSIFRS 287
                       34445779******..55555545699**********************9999999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.45E-1712105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-1512105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-1015103No hitNo description
SMARTSM010192.9E-617105IPR003340B3 DNA binding domain
PROSITE profilePS5086310.2528105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-12203288IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0025210288IPR003340B3 DNA binding domain
CDDcd100175.77E-8217286No hitNo description
Gene3DG3DSA:2.40.330.101.2E-10219288IPR015300DNA-binding pseudobarrel domain
PfamPF023625.9E-8225287IPR003340B3 DNA binding domain
PROSITE profilePS508639.742234288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASRRPKGFE PPKSPHFFKI ILSSGKLIPK RFLQRHGNDI PGSVFLKVPS STILWPVEME  60
WSDGMARLGQ GWQKFTDYYS IGFGQLLVFR YEPSSIFHVV IIDTSASEIE YPTDPVIMDK  120
SEPKCEFILL KKEETDNISA KISEDCRPSP KFRKKSKSAL ALASRKVNSG MIRNSASRAS  180
PATPVARTSN VPCPTALEMA RDFKSKHPMF ILVVYPSYLK DSHPVVTLKH KKDSWPVKLI  240
KYRGDLGKLS QGWFAFARAT SLCEGDVCVL ELTKPSPTVL EVSIFRSSDY T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00403.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027830.10.0PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A059AKH30.0A0A059AKH3_EUCGR; Uncharacterized protein
STRINGXP_010027828.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-15B3 family protein