PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00399.1.p | ||||||||
Common Name | EUGRSUZ_I00399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 85aa MW: 9757.4 Da PI: 10.4128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4e-13 | 3 | 80 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p kf+++h + +s++++ +++sW kli + +++ l +GW F++a ++egD++vF+l++rs + l v++fr+ Eucgr.I00399.1.p 3 SVPVKFMRTHIK---RSMQVVTIKHKNESWPAKLIKfpWDHGK---L-SGWFPFARATSVCEGDVCVFELTKRSPTVLEVSIFRN 80 68*****99942...577899899999*******665655542...4.6************************9999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0026 | 1 | 81 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.898 | 1 | 81 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-12 | 2 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-12 | 3 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.34E-8 | 3 | 79 | No hit | No description |
Pfam | PF02362 | 5.0E-10 | 3 | 80 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MQSVPVKFMR THIKRSMQVV TIKHKNESWP AKLIKFPWDH GKLSGWFPFA RATSVCEGDV 60 CVFELTKRSP TVLEVSIFRN SDYT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00399.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018718135.1 | 6e-41 | PREDICTED: B3 domain-containing protein REM19-like | ||||
TrEMBL | A0A059AL43 | 2e-56 | A0A059AL43_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027828.1 | 2e-36 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 7e-10 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00399.1.p |