PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.I00397.1.p | ||||||||
Common Name | EUGRSUZ_I00397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 16864.7 Da PI: 10.8953 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.5e-14 | 47 | 142 | 3 | 100 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++++++ l+ + + +p f+++h +k+++ +tl+ ++ rsW+vkl k+s+r +++GW F+++ L+ gD +vF+l+++++ + Eucgr.I00397.1.p 47 VIEMSPSCLRYCSVNVPAGFMRSHISKSPQFVTLKYMN---RSWSVKL--FKHSERygsGRFSGGWLMFARETFLRRGDACVFELVEKNRVVF 134 5678999999**************77766766666555...9999999..5555552224688**********************98888888 PP EEEEE-SS CS B3 93 vvkvfrks 100 v++fr+s Eucgr.I00397.1.p 135 EVSIFRRS 142 99999985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-20 | 39 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-17 | 43 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-15 | 44 | 140 | No hit | No description |
PROSITE profile | PS50863 | 11.857 | 45 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-11 | 46 | 142 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-11 | 47 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
MSIMIICRRL PENSERRASS VFYGSKGLSP PALKMARKFR SVYPTFVIEM SPSCLRYCSV 60 NVPAGFMRSH ISKSPQFVTL KYMNRSWSVK LFKHSERYGS GRFSGGWLMF ARETFLRRGD 120 ACVFELVEKN RVVFEVSIFR RSDYT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 32 | 145 | 35 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 32 | 145 | 35 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.I00397.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A059AKG9 | 1e-101 | A0A059AKG9_EUCGR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14804 | 4 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-16 | related to vernalization1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.I00397.1.p |