PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I00292.1.p | ||||||||
Common Name | EUGRSUZ_I00292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19048.6 Da PI: 9.8386 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.6e-21 | 63 | 112 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + r++lg+f+tae Aa+a+++a+++++ Eucgr.I00292.1.p 63 KYRGVRQRP-WGKWAAEIRDPAK---SSRVWLGTFDTAEAAARAYDEAALQIRR 112 8********.**********843...6***********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-33 | 62 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-15 | 63 | 112 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 63 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-23 | 63 | 122 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.48E-20 | 63 | 122 | No hit | No description |
PROSITE profile | PS51032 | 24.724 | 63 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 64 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-12 | 86 | 102 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MPSDTSNLDL LLSVGEVRAG PATVQTAVQT AKADQPTHRA PPVYEYRIPA TTMLRLDPNP 60 RRKYRGVRQR PWGKWAAEIR DPAKSSRVWL GTFDTAEAAA RAYDEAALQI RRNKAKLNFP 120 ENVRLPPLPP PAASEADPAA TRLAVSCESP APSNSNASNC EGQTPVLRLL EKEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-23 | 62 | 123 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-23 | 62 | 123 | 4 | 66 | ATERF1 |
3gcc_A | 7e-23 | 62 | 123 | 4 | 66 | ATERF1 |
5wx9_A | 3e-22 | 63 | 125 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I00292.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027737.1 | 3e-54 | PREDICTED: ethylene-responsive transcription factor ABR1 isoform X1 | ||||
TrEMBL | A0A059AKG0 | 1e-122 | A0A059AKG0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027737.1 | 1e-53 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 7e-25 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I00292.1.p |