PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00213.5.p
Common NameEUGRSUZ_I00213
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 481aa    MW: 53791 Da    PI: 4.3153
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00213.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.52.4e-4461301129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       l+pGfrFhPtd elv +yLkkkv gk+++  e+i+evdiy++ Pw Lp ++  +++ +wyfF++r++kyatg r+nr+t+ g+Wk+tg+d++v
  Eucgr.I00213.5.p   6 LAPGFRFHPTDVELVLYYLKKKVLGKRFRN-EAIAEVDIYNFPPWALPgHARLSRDLKWYFFCPRERKYATGARTNRSTDYGFWKTTGNDRPV 97 
                       579************************999.89***************433334666************************************ PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  +g++vg  ++L+f++    k+e+tdWvmheyrle
  Eucgr.I00213.5.p  98 IY-NGKTVGKIRSLIFHR---TKTERTDWVMHEYRLE 130
                       **.999***********4...44568*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-533152IPR003441NAC domain
PROSITE profilePS5100552.1496152IPR003441NAC domain
PfamPF023654.8E-248129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAMRSLAPGF RFHPTDVELV LYYLKKKVLG KRFRNEAIAE VDIYNFPPWA LPGHARLSRD  60
LKWYFFCPRE RKYATGARTN RSTDYGFWKT TGNDRPVIYN GKTVGKIRSL IFHRTKTERT  120
DWVMHEYRLE DEDLKTKGVA QDTYVLCEIY EKDGRGPRNG AQYGAPFNEE EWDDDEEVDV  180
PSASGFTGEF ILPDMQQHSE RYCVGSTSNA CPAGPPQIMP SVVNVPAPAP ANDVTMADSQ  240
NLYEHLRSNG IFGDDIPATS CENDRVENLD SINLDGDHNA ENEKDDTFDG LEDLGPYHHV  300
DNFSFIHSDA NIFHTWDSYM ELDDFVAPLT SADGPAQSLC TSVNVDEEYF ELEDLVTPVN  360
CNGEAGQSNE VSVDSSYFNL GGNDGLVCSG TIPNPPVFAQ PLHGSDVTCN AEDLPQFNRH  420
SQLEGFEGCV DMHQEGHGVE CTNQEIVRYD VVAANSSIDN PDVGYVHACE NQGRGRSQFW  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-39115312166NO APICAL MERISTEM PROTEIN
1ut4_B7e-39115312166NO APICAL MERISTEM PROTEIN
1ut7_A7e-39115312166NO APICAL MERISTEM PROTEIN
1ut7_B7e-39115312166NO APICAL MERISTEM PROTEIN
4dul_A7e-39115312166NAC domain-containing protein 19
4dul_B7e-39115312166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00213.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027672.10.0PREDICTED: NAC domain-containing protein 82 isoform X9
TrEMBLA0A059AJN40.0A0A059AJN4_EUCGR; Uncharacterized protein
STRINGXP_010027667.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-62NAC domain containing protein 103