PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I00213.1.p
Common NameEUGRSUZ_I00213, LOC104418129
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 629aa    MW: 69571 Da    PI: 4.4464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I00213.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.93.8e-4461301129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       l+pGfrFhPtd elv +yLkkkv gk+++  e+i+evdiy++ Pw Lp ++  +++ +wyfF++r++kyatg r+nr+t+ g+Wk+tg+d++v
  Eucgr.I00213.1.p   6 LAPGFRFHPTDVELVLYYLKKKVLGKRFRN-EAIAEVDIYNFPPWALPgHARLSRDLKWYFFCPRERKYATGARTNRSTDYGFWKTTGNDRPV 97 
                       579************************999.89***************433334666************************************ PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  +g++vg  ++L+f++    k+e+tdWvmheyrle
  Eucgr.I00213.1.p  98 IY-NGKTVGKIRSLIFHR---TKTERTDWVMHEYRLE 130
                       **.999***********4...44568*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-533152IPR003441NAC domain
PROSITE profilePS5100552.1496152IPR003441NAC domain
PfamPF023657.7E-248129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MAMRSLAPGF RFHPTDVELV LYYLKKKVLG KRFRNEAIAE VDIYNFPPWA LPGHARLSRD  60
LKWYFFCPRE RKYATGARTN RSTDYGFWKT TGNDRPVIYN GKTVGKIRSL IFHRTKTERT  120
DWVMHEYRLE DEDLKTKGVA QDTYVLCEIY EKDGRGPRNG AQYGAPFNEE EWDDDEEVDV  180
PSASGFTGEF ILPDMQQHSE RYCVGSTSNA CPAGPPQIMP SVVNVPAPAP ANDVTMADSQ  240
NLYEHLRSNG IFGDDIPATS CENDRVENLD SINLDGDHNA ENEKDDTFDG LEDLGPYHHV  300
DNFSFIHSDA NIFHTWDSYM ELDDFVAPLT SADGPAQSLC TSVNVDEEYF ELEDLVTPVN  360
CNGEAGQSNE VSVDSSYFNL GGNDGLVCSG TIPNPPVFAQ PLHGSDVTCN AEDLPQFNRH  420
SQLEGFEGCV DMHQEGHGVE CTNQEIVRYD VVAANSSIDN PDVGYVHACE NQGRGEGTIF  480
CCMLRFLEYP AHPSSAVERP APCIGAKRSD GHALFLLYGY SSFHIKAEVT LGGGGRGCTN  540
DALSHGLEGF PFADCEENGS GSGKGAANYG CGISSTLFLL TLRLPCCPPP WGDVYYWRLT  600
SWLSFLAAAW LIVHISVWFQ LTSTNSSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-40515219168NAC domain-containing protein 19
3swm_B5e-40515219168NAC domain-containing protein 19
3swm_C5e-40515219168NAC domain-containing protein 19
3swm_D5e-40515219168NAC domain-containing protein 19
3swp_A5e-40515219168NAC domain-containing protein 19
3swp_B5e-40515219168NAC domain-containing protein 19
3swp_C5e-40515219168NAC domain-containing protein 19
3swp_D5e-40515219168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I00213.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027670.10.0PREDICTED: NAC domain-containing protein 82 isoform X4
TrEMBLA0A059AKE20.0A0A059AKE2_EUCGR; Uncharacterized protein
STRINGXP_010027667.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.14e-61NAC domain containing protein 103