PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I00191.2.p

Common Name

EUGRSUZ_I001911

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 160aa MW: 18362.8 Da PI: 6.4328

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I00191.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.5	8.1e-34	18	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+Ptdeelv ++L++k ++ + +l + +++++ ++++PwdL+ k+ ++ ++ yf+++r +nr+t++gyWk +++ Eucgr.I00191.2.p 18 LPPGFRFSPTDEELVLHFLHPKKQQASlSPLYAHlVPDLKSHHHDPWDLHGKALSNGSH-YFYFSRM-------MNNRITENGYWKDLDMEEP 102 79******************99999533434459*********9555444444.5554443.......358************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+ + ge +g+kk+L+f+ g+ap+g++t+Wvm+ey+l Eucgr.I00191.2.p 103 VFGEAGEIIGMKKSLTFHIGEAPTGQETNWVMQEYHL 139 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-38	15	144	IPR003441	NAC domain
PROSITE profile	PS51005	36.143	18	158	IPR003441	NAC domain
Pfam	PF02365	2.1E-22	19	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MRDVKEKEEK DDGKMLKLPP GFRFSPTDEE LVLHFLHPKK QQASLSPLYA HLVPDLKSHH 60 HDPWDLHGKA LSNGSHYFYF SRMMNNRITE NGYWKDLDME EPVFGEAGEI IGMKKSLTFH 120 IGEAPTGQET NWVMQEYHLV SFHELANSTQ VSANIPQKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-27	8	151	10	157	NAC domain-containing protein 19
3swm_B	1e-27	8	151	10	157	NAC domain-containing protein 19
3swm_C	1e-27	8	151	10	157	NAC domain-containing protein 19
3swm_D	1e-27	8	151	10	157	NAC domain-containing protein 19
3swp_A	1e-27	8	151	10	157	NAC domain-containing protein 19
3swp_B	1e-27	8	151	10	157	NAC domain-containing protein 19
3swp_C	1e-27	8	151	10	157	NAC domain-containing protein 19
3swp_D	1e-27	8	151	10	157	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I00191.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010027640.1	1e-110	PREDICTED: NAC domain-containing protein 104
Swissprot	Q8GWK6	9e-40	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A059AJK6	1e-116	A0A059AJK6_EUCGR; Uncharacterized protein
STRING	XP_010027640.1	1e-109	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	7e-42	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Eucgr.I00191.2.p

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]