PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.I00100.2.p | ||||||||
Common Name | EUGRSUZ_I00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28306.8 Da PI: 5.9679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.6 | 3.7e-30 | 17 | 89 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + ++ g+kk Lvfy g+ap+g+kt+W+mheyrl Eucgr.I00100.2.p 17 GEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGR--PKTLGIKKALVFYAGKAPRGVKTNWIMHEYRL 89 689************************************98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.239 | 1 | 115 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-36 | 12 | 115 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-15 | 20 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MISDGVWVGI AEMALYGEKE WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPIGRPKT 60 LGIKKALVFY AGKAPRGVKT NWIMHEYRLA NIDRSAGKKK NSRLDDWVLC RIHNKKGTIE 120 KHSPSTLNET ADFPEMEIKP QIVMPAALNP YTSPQYADSP MTTDHMYTDS SEFLPKLHTD 180 SSCSEHAASP GSACEKEVQS EVKWDDWEKA LDFQFGSVDD FLDDALVQGQ FQLDQFSPLE 240 DMSMYLQQSF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 10 | 121 | 60 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.I00100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027566.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 4e-86 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A059AJC5 | 0.0 | A0A059AJC5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027566.1 | 1e-180 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-88 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.I00100.2.p |