PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04892.1.p
Common NameEUGRSUZ_H04892, LOC104415849
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 283aa    MW: 30228.8 Da    PI: 7.6347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04892.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-20131181256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++ a++k++g+
  Eucgr.H04892.1.p 131 KYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFETAEGAAQAYDVAALKYRGN 181
                       8********.**********64....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-32130189IPR001471AP2/ERF domain
CDDcd000184.33E-30131190No hitNo description
PROSITE profilePS5103225.501131188IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22131189IPR016177DNA-binding domain
SMARTSM003801.5E-35131194IPR001471AP2/ERF domain
PfamPF008474.3E-13131180IPR001471AP2/ERF domain
PRINTSPR003672.8E-11132143IPR001471AP2/ERF domain
PRINTSPR003672.8E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSGLKVADRG DKAPILYPGL DRERETSAMV LALARVVAGE VPGDAEESCP FPFPSGVLRL  60
KRGHGDLSAE PSAEAQLRRA PGRESSVDDA ARGIMEGPSM KTTNHATPTY EYSNSTAAMS  120
MSNDEHQPRR KYRGVRQRPW GKWAAEIRDP VKAARVWLGT FETAEGAAQA YDVAALKYRG  180
NKAKLNFPEN VVARLSLAAP PATQMTVPDA ARTHVTVPAD TEHQLASGPD HGCGEWCSWL  240
SPDPDLAHSN LLPSSSSPSS SSSSVSKAAS FAFPTRSGSW PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23130191466ATERF1
3gcc_A9e-23130191466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04892.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025536.10.0PREDICTED: ethylene-responsive transcription factor ERF110
TrEMBLA0A059B8J20.0A0A059B8J2_EUCGR; Uncharacterized protein
STRINGXP_010025536.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-34related to AP2 6l