PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04834.1.p | ||||||||
Common Name | EUGRSUZ_H04834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20023.1 Da PI: 7.3479 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.2 | 2.9e-20 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i k qvtfskRr g++KKA+EL++LC++++ +i+fs+ k++ + Eucgr.H04834.1.p 17 IPKKNHLQVTFSKRRSGLFKKASELCTLCGVDIGIIVFSPASKVFSF 63 55677789**********************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.567 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-29 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-31 | 8 | 76 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-24 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-23 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAKKPSLGRQ KIAISKIPKK NHLQVTFSKR RSGLFKKASE LCTLCGVDIG IIVFSPASKV 60 FSFGHPEVEF IIERFLAQDP APPDSGECRL IEAHRNANLR DLNGILTQVL EELEAERKRG 120 EALDEMRRES QRQCWWEAPI DELGLCELEQ LGGSMEELKK NVMRWINELM KSENSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04834.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027322.1 | 1e-122 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 1e-52 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A059B7H1 | 1e-125 | A0A059B7H1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027322.1 | 1e-121 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-48 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04834.1.p |
Publications ? help Back to Top | |||
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