PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04693.1.p
Common NameEUGRSUZ_H04693, LOC104415725
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ARR-B
Protein Properties Length: 573aa    MW: 64221.5 Da    PI: 5.8624
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04693.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.3e-24204257155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Eucgr.H04693.1.p 204 KARVVWSVDLHQKFVRAVNQI-GYDKVGPKKILDLMNVPWLTRENVASHLQKYRL 257
                       68*******************.9*******************************8 PP
2Response_reg822e-27221301109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D++mp+mdG++ll+     e++lp+i+++  ge + +++ ++
  Eucgr.H04693.1.p  22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALKLLRERKggYDIVISDVNMPDMDGFKLLELVGL-EMDLPVIMMSVDGETSRVKKGVQ 112
                       89*********************.***************999999*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+ ++el++
  Eucgr.H04693.1.p 113 HGACDYLLKPIRMKELRN 130
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.9E-4419154No hitNo description
SuperFamilySSF521723.7E-3519144IPR011006CheY-like superfamily
SMARTSM004482.0E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.0121136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2422131IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.29E-3123136No hitNo description
SuperFamilySSF466892.87E-17202261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27202262IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-22204257IPR006447Myb domain, plants
PfamPF002498.3E-7206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MMESSKGFSS PRSNGFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCG LARDALKLLR  60
ERKGGYDIVI SDVNMPDMDG FKLLELVGLE MDLPVIMMSV DGETSRVKKG VQHGACDYLL  120
KPIRMKELRN IWQHVFRKRI HEIKDIESHD GLEDLQVTKS GYDWVDDGHF FSGEDMLTPG  180
KKRKDLENKH DEKDLTDPSS SAKKARVVWS VDLHQKFVRA VNQIGYDKVG PKKILDLMNV  240
PWLTRENVAS HLQKYRLYLS RLQKENDMRS SYGGMKHSDL NPQDAARASS HQNSINFQQN  300
DATNGNSKFA GNNLLIQNLN SKNNEIDTRG TIITEQSGPG ISHSLPPLEQ EMKFTAFDGI  360
TPRSYPWREV PEIQFHQENA GNQPEDCFGH VAGPVGGLQN HVQVDELLPI TSISSRAQLP  420
NPIETKPLNV DYAINSFTQA SPVKTRIDSF PLPTKSHMGN QQAIQPPSIN TPIMESQGFN  480
PSCITDLESS RRNFSSTPTE SPFTSPDEIL QVGWLQDYST CLGLQNIEFP DFGDPTIIPG  540
VPVHLYTALK FDYDQPSDQS ELPVINQGLF IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17200262163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04693.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025368.10.0PREDICTED: two-component response regulator ARR11
SwissprotQ5N6V81e-131ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A059B7C30.0A0A059B7C3_EUCGR; Uncharacterized protein
STRINGXP_010025368.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80662740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-132response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]