PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H04623.1.p

Common Name

EUGRSUZ_H04623, LOC104415668

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

CAMTA

Protein Properties

Length: 992aa MW: 110648 Da PI: 6.0369

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H04623.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.7	9.2e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e + rwlk+ e++ iL+n+e+ +lt+++++rp+sgsl+L+n++++r+fr+DG++w+kkkd +tv E+he+LKvg+ve l+cyYah+e+np+ Eucgr.H04623.1.p 12 YQEaQYRWLKPAEVLYILQNHESCQLTQQPPQRPSSGSLFLFNKRVLRFFRRDGHNWRKKKDQRTVGEAHERLKVGNVEKLNCYYAHGEDNPN 104 566699************************************************************************************* PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L+ + ++ivlvhy++ Eucgr.H04623.1.p 105 FQRRSYWMLDPACDHIVLVHYRD 127 *******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.802	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.7E-76	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-47	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.8E-11	425	514	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.09E-19	430	514	IPR014756	Immunoglobulin E-set
Pfam	PF01833	2.0E-10	430	513	IPR002909	IPT domain
CDD	cd00102	2.44E-6	430	514	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.7E-16	627	723	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.122	628	732	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.68E-16	631	722	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.46E-13	633	720	No hit	No description
Pfam	PF12796	3.7E-9	640	723	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.033	661	693	IPR002110	Ankyrin repeat
SMART	SM00248	9.3E-4	661	690	IPR002110	Ankyrin repeat
SMART	SM00248	930	700	729	IPR002110	Ankyrin repeat
SMART	SM00015	7	778	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.712	779	808	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	3.72E-9	820	882	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.21	830	852	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.224	831	860	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.028	833	851	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	3.8E-4	853	875	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.993	855	878	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.0E-5	856	875	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MMPSGYNISD LYQEAQYRWL KPAEVLYILQ NHESCQLTQQ PPQRPSSGSL FLFNKRVLRF 60 FRRDGHNWRK KKDQRTVGEA HERLKVGNVE KLNCYYAHGE DNPNFQRRSY WMLDPACDHI 120 VLVHYRDITE GKHSSGSKAL FSPGSSAALS PSLSPSPYSN QNQGSASLDS CQTHSSPSSA 180 EVSSINAIIN HGTDNLDGVE GAALYSSSDL DVSKALRRIE EQLSLNDDAI KEIVPVFDDD 240 EYFNSVGLLD YEREISQQDQ HEALLQVSDP VNCQFLSEND GARNVSSNYM PLKDTDDDGQ 300 HNLQAFEQGH LVKEESFSWT DMESYLSPPA KGYLENNAQI PNENEKLHSY TQTGPAEGQE 360 GYLLSDANKN RDPLASLLEL DNFEVSAYPS FGETHGANPE YYPVSFGQGQ PGISVVGSSC 420 LTVAKTQKYT IREISPEWGY TTEATKIVIV GSFLCDPSES VWSCMFGDIE VPVEIIQQGV 480 IRCEAPPHSP GKVTLCITSS NRQSCSEVRE FEYRVKSNFC AHCNLEQTKA ARHTEELLLL 540 VRFVQMLLCD SAMQKEDGVT LGIHVPRNSK AEDDPWSHII DGLLVGHENS SETSNWLLQE 600 LLKDKLQQWI ALRSRQEHDQ GGCFLSKKEQ GIIHMIAGLG FEWALNSILG CGVNVNFRDI 660 NGWTALHWAA RFGREKMVAA LVASGASAGA VTDPRCQDPA GKTPASIAAS SGHKGLAGYL 720 SERALTSHLS SLTVKESELS RGSAELEAER TINSITNQTL ATDEDQLSLK DTLAAVRNAT 780 QAAARIQSAF RAHSFRKRQQ MQVAAAIDDY GSSGDIQGFT GMLKLSSRNA RDSAALSIQK 840 KFRGWKGRKD FLRFRQKVVK IQAHVRGYQV RKHYKVLCWA VGILDKVVLR WRRKGVGLRS 900 FQKEAESIED SDDEDILKVF RKQKVDATVD EAVSRVLGMV DSPNARQQYR RMLERYRQAK 960 AELNSTSSEA APSPSEEFSN MDDDNFIYQF P*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MMPSGYNISD LYQEAQYRWL KPAEVLYILQ NHESCQLTQQ PPQRPSSGSL FLFNKRVLRF  60
FRRDGHNWRK KKDQRTVGEA HERLKVGNVE KLNCYYAHGE DNPNFQRRSY WMLDPACDHI  120
VLVHYRDITE GKHSSGSKAL FSPGSSAALS PSLSPSPYSN QNQGSASLDS CQTHSSPSSA  180
EVSSINAIIN HGTDNLDGVE GAALYSSSDL DVSKALRRIE EQLSLNDDAI KEIVPVFDDD  240
EYFNSVGLLD YEREISQQDQ HEALLQVSDP VNCQFLSEND GARNVSSNYM PLKDTDDDGQ  300
HNLQAFEQGH LVKEESFSWT DMESYLSPPA KGYLENNAQI PNENEKLHSY TQTGPAEGQE  360
GYLLSDANKN RDPLASLLEL DNFEVSAYPS FGETHGANPE YYPVSFGQGQ PGISVVGSSC  420
LTVAKTQKYT IREISPEWGY TTEATKIVIV GSFLCDPSES VWSCMFGDIE VPVEIIQQGV  480
IRCEAPPHSP GKVTLCITSS NRQSCSEVRE FEYRVKSNFC AHCNLEQTKA ARHTEELLLL  540
VRFVQMLLCD SAMQKEDGVT LGIHVPRNSK AEDDPWSHII DGLLVGHENS SETSNWLLQE  600
LLKDKLQQWI ALRSRQEHDQ GGCFLSKKEQ GIIHMIAGLG FEWALNSILG CGVNVNFRDI  660
NGWTALHWAA RFGREKMVAA LVASGASAGA VTDPRCQDPA GKTPASIAAS SGHKGLAGYL  720
SERALTSHLS SLTVKESELS RGSAELEAER TINSITNQTL ATDEDQLSLK DTLAAVRNAT  780
QAAARIQSAF RAHSFRKRQQ MQVAAAIDDY GSSGDIQGFT GMLKLSSRNA RDSAALSIQK  840
KFRGWKGRKD FLRFRQKVVK IQAHVRGYQV RKHYKVLCWA VGILDKVVLR WRRKGVGLRS  900
FQKEAESIED SDDEDILKVF RKQKVDATVD EAVSRVLGMV DSPNARQQYR RMLERYRQAK  960
AELNSTSSEA APSPSEEFSN MDDDNFIYQF P*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H04623.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010025296.1	0.0	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A059B6X2	0.0	A0A059B6X2_EUCGR; Uncharacterized protein
STRING	XP_010025296.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Eucgr.H04623.1.p
Entrez Gene	104415668

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]