PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04476.1.p | ||||||||
Common Name | EUGRSUZ_H04476, LOC104415541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YC | ||||||||
Protein Properties | Length: 254aa MW: 28136.9 Da PI: 5.2549 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 174.8 | 8.6e-55 | 76 | 179 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql+sfw++q i++++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd+fd Eucgr.H04476.1.p 76 QLQSFWANQyqeIDRVADFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDVFD 168 89******9888999****************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivpr+el Eucgr.H04476.1.p 169 FLVDIVPREEL 179 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.71E-33 | 58 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-21 | 98 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-37 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDQQGHGQPP PIGVVPAAGQ LPYGTMPYQP GQMIGPSSFP HIQPTSQPQP PGSQLAHNQL 60 AYQQIHQQQQ QQLQQQLQSF WANQYQEIDR VADFKNHSLP LARIKKIMKA DEDVRMISAE 120 APIVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDVFDFL VDIVPREELK 180 EEGLGTVPGG VLPASGPVDG LPYCYVPPQQ VCQAGPPGMF VGKGVVDPAM YPYMAQQMCP 240 ETSEQQQSPS DHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-60 | 84 | 176 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04476.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010025170.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3 | ||||
Refseq | XP_010025171.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q8L4B2 | 3e-80 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A059B6L6 | 0.0 | A0A059B6L6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010025170.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-75 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04476.1.p |
Entrez Gene | 104415541 |