PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04157.1.p | ||||||||
Common Name | EUGRSUZ_H04157, LOC104417578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26080.1 Da PI: 4.8559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 5 | 50 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++++q+G g W+++++ g++R++k+c++rw++yl Eucgr.H04157.1.p 5 AWTEEEDHLLKRCIEQYGEGKWRRVPQLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE +l+++++ +lG++ W++Ia +++ gRt++++k++w+ + Eucgr.H04157.1.p 56 RGSFTEEEVDLIIQLHSLLGNR-WSLIAGRLP-GRTANDVKNYWNCH 100 89********************.*********.***********977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.65 | 1 | 50 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-13 | 2 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.97E-29 | 5 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-16 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-23 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-11 | 5 | 50 | No hit | No description |
PROSITE profile | PS51294 | 26.328 | 51 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 56 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-12 | 58 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 58 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGGVAWTEEE DHLLKRCIEQ YGEGKWRRVP QLAGLNRCRK SCRLRWLNYL RPNIKRGSFT 60 EEEVDLIIQL HSLLGNRWSL IAGRLPGRTA NDVKNYWNCH LSKKLDPQQI SNHEDNDLNT 120 KDDIKILCPS QPRDFAASSG GWTQPTTVAL KAPSSAHGPM PEEIGTSPSP PPKLYADQDE 180 LNNSNPPFFE EDGHVLGDLG MDLQFDGSAG LMQSSNQWDW DDLISDLDLW G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 6 | 106 | 10 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04157.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027133.1 | 1e-171 | PREDICTED: transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 5e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059B607 | 1e-170 | A0A059B607_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027133.1 | 1e-171 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17352 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-54 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04157.1.p |
Entrez Gene | 104417578 |
Publications ? help Back to Top | |||
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