PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H04114.2.p
Common NameEUGRSUZ_H04114
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 870aa    MW: 97269 Da    PI: 6.3006
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H04114.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.21.3e-39144221178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cqv gC++dl +ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Eucgr.H04114.2.p 144 ACQVVGCRVDLRSAKDYHRRHKVCEMHSKASEALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 221
                       5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32141206IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958142219IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37143224IPR004333Transcription factor, SBP-box
PfamPF031104.2E-29145218IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MEARLKEKVH FGLMAPDLNS VGKKSMEWDP NEWRWDGDLF TASPLNPMES ECRSRQLFPV  60
RPDNLATADF NMCSSSVLED VQNEMGKREA EKRRRVVVVE DEELDDEAEG LDLNIGGQGY  120
PIIDSSIKGG KKIKSVGPVP NGPACQVVGC RVDLRSAKDY HRRHKVCEMH SKASEALVGN  180
VMQRFCQQCS RFHVLQEFDE GKRSCRRRLA GHNRRRRKTH PETVASGGSL GDERGSHYLL  240
VSLLRILSNM HSSSLDPTKD QDLLSHLLRN LASTIDGQRL SNLLQESKGA SASSPDKVPD  300
VIRDDPENAK ASVMHTETNF QDPVRSVGHQ VLQSAPDLMP QGTGTDSTGD GSQQPPTVFK  360
STGQCLARDD RVASVNESND TSQRIRMRNI DLNSSYEDTQ GFPVNAQTCN ASEHSRQGAN  420
KSTPPHTSST SNSTSTDSPS SSSGEAQCRT DRIVFKLFGK DPNDFPLAMR TQILNWLSHS  480
PTNMESYIRP GCIILTIYLC LEKTMWRELH SNLGSTLRKL LDVSNDSFWR TGWIYTRVQD  540
SVSFVYNGEI VLGTPLPLGH NSGKILSIKP IAVSVMQSAE FVVKGFNLFK PTSKLFCALE  600
GKYLAQKSFC GLTEEAEMIN EDEDDEIQFL SFRCSVPKTC GRGFIEVEDH GLSCSFFPFI  660
VAEEEVCSEI RMLESEIEAL ETPLDIKQES EMAEARSKAL DFINEIGWLL HRSHAKHRLG  720
DLNHTLGLFP FRRFKWLMEF AMEHDWCAVV KKLLGICFNG VVDAGEHPSI DLAMLDMNLL  780
HRAVRRNCRT MVEFLLRYIP HEDSDKAGLE QVQQIPENRR NFLFKANAVG PAGLTPLHIA  840
ASSKGFELVL DALTNDPLLV SPSPFLCWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-291452181184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H04114.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024865.10.0PREDICTED: squamosa promoter-binding-like protein 1
TrEMBLA0A059B6560.0A0A059B656_EUCGR; Uncharacterized protein
STRINGXP_010024865.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12