PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H04023.1.p | ||||||||
Common Name | EUGRSUZ_H04023, LOC104415216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GATA | ||||||||
Protein Properties | Length: 160aa MW: 17239.6 Da PI: 10.4865 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 31 | 65 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Eucgr.H04023.1.p 31 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 65 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.519 | 25 | 61 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.6E-14 | 25 | 82 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-13 | 27 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.3E-16 | 29 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.42E-14 | 30 | 82 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 31 | 56 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.5E-17 | 31 | 65 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEMQDASDKG SESPGVASSE ESHVTETKKT CADCGTTKTP LWRGGPAGPK SLCNACGIRS 60 RKKRRDLLGV SKKPTEDKKR KKINSHSPSN NSTGNRFGDS LKQKLLAFLR KEVMMQKKSA 120 VPSSSSSSTS SLERQRKKLG EEEQAAVLLM ALSYGSVYA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 81 | KRRDLLGVSKKPTEDKKRKK |
2 | 77 | 81 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H04023.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010024769.1 | 1e-113 | PREDICTED: GATA transcription factor 16 | ||||
Swissprot | Q9FJ10 | 4e-42 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A059B6H0 | 1e-112 | A0A059B6H0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024769.1 | 1e-112 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-44 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H04023.1.p |
Entrez Gene | 104415216 |
Publications ? help Back to Top | |||
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