PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03387.1.p
Common NameEUGRSUZ_H03387, LOC104414738
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 260aa    MW: 29332.2 Da    PI: 9.8612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03387.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.6e-51141391128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++v+
  Eucgr.H03387.1.p  14 LPPGFRFHPTDEELVVQYLKRKVFACPLPA-SFIPEVDVCKADPWDLPG---DAEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDRRVV 102
                       79****************************.89***************3...457899*********************************** PP

               NAM  94 skkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                       s+++++   glkktLvfy+g+ap+g+ktdW+mheyrl
  Eucgr.H03387.1.p 103 SSRSHQlvLGLKKTLVFYRGKAPHGSKTDWIMHEYRL 139
                       *95544449**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-589174IPR003441NAC domain
PROSITE profilePS5100556.6514174IPR003441NAC domain
PfamPF023653.4E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEKVSFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFACP LPASFIPEVD VCKADPWDLP  60
GDAEQERYFF STREAKYPNG NRSNRATVSG YWKATGIDRR VVSSRSHQLV LGLKKTLVFY  120
RGKAPHGSKT DWIMHEYRLV DGLAPGTALP PKMNLNQSPE VPRENWVLCR IFFKRRSTKN  180
DGHNHNIESF RTTNEVSKVR GNGPVFYDFM ARHKTDLNLT PCTSSSGSSG VTELSLRGGP  240
EEHEESSSCN SFSLSRRIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-501218015171NO APICAL MERISTEM PROTEIN
1ut4_B5e-501218015171NO APICAL MERISTEM PROTEIN
1ut7_A5e-501218015171NO APICAL MERISTEM PROTEIN
1ut7_B5e-501218015171NO APICAL MERISTEM PROTEIN
3swm_A6e-501218018174NAC domain-containing protein 19
3swm_B6e-501218018174NAC domain-containing protein 19
3swm_C6e-501218018174NAC domain-containing protein 19
3swm_D6e-501218018174NAC domain-containing protein 19
3swp_A6e-501218018174NAC domain-containing protein 19
3swp_B6e-501218018174NAC domain-containing protein 19
3swp_C6e-501218018174NAC domain-containing protein 19
3swp_D6e-501218018174NAC domain-containing protein 19
4dul_A5e-501218015171NAC domain-containing protein 19
4dul_B5e-501218015171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03387.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024206.10.0PREDICTED: NAC domain-containing protein 83
SwissprotQ9FY931e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A059B3480.0A0A059B348_EUCGR; Uncharacterized protein
STRINGXP_010024206.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-93NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]