PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.H03362.1.p | ||||||||
Common Name | EUGRSUZ_H03362, LOC104414720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 26924.5 Da PI: 10.5774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.7e-32 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 lp GfrF+Ptdeelvv+yL++kv + +l++ vi+e+d++ ++P Lp ++ +++ yfFs+r++++ g++ r a+ gyWk + k+k++ Eucgr.H03362.1.p 15 LPIGFRFRPTDEELVVHYLRRKVLAVPLPA-AVIPELDVFGTDPGGLPGNL---RERRYFFSRRNRSSG-GRECIRvAAGFGYWKYKTKSKQI 102 699***************************.89***************543...4578*****999865.66667768889************ PP NAM 93 lsk...kgelvglkktLvfykg..rapkgektdWvmheyrl 128 l++ +++++g++ktLvf +g +a ++ +++W++he+++ Eucgr.H03362.1.p 103 LASdgtGNQVIGMRKTLVFCEGkrSACDAARSRWILHEFTI 143 *998888889**********8732556778*********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-38 | 8 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.698 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-21 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MEVPRFFASA AGIKLPIGFR FRPTDEELVV HYLRRKVLAV PLPAAVIPEL DVFGTDPGGL 60 PGNLRERRYF FSRRNRSSGG RECIRVAAGF GYWKYKTKSK QILASDGTGN QVIGMRKTLV 120 FCEGKRSACD AARSRWILHE FTIAGTRENS KSTSMARAGD ENWAVYRLFQ KKMRPKRSDN 180 GNGDFSHRKR KKSSSVIDLR SEAIAGDSPD TPPPPSSPCS SSITDNGSSC KALDQEDISS 240 SSR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-22 | 13 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-22 | 13 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-22 | 13 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-22 | 13 | 172 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-22 | 13 | 172 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-22 | 13 | 172 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 187 | 191 | RKRKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.H03362.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010024184.1 | 1e-180 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | A0A059B3N7 | 1e-178 | A0A059B3N7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010024184.1 | 1e-179 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-34 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.H03362.1.p |
Entrez Gene | 104414720 |