PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03292.1.p
Common NameEUGRSUZ_H03292, LOC104414672
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 324aa    MW: 36345.6 Da    PI: 4.4312
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03292.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-092582902355
                       SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Eucgr.H03292.1.p 258 PYPTEEEKLKLSEVTGLDQKQINNWFINQRKRH 290
                       8*****************************885 PP
2ELK32.32.2e-11211231222
               ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                       LK+ LlrKYsgyL+sL++EF+
  Eucgr.H03292.1.p 211 LKEVLLRKYSGYLSSLRKEFL 231
                       99******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.7E-2064108IPR005540KNOX1
PfamPF037904.1E-2066105IPR005540KNOX1
SMARTSM012561.7E-23112163IPR005541KNOX2
PfamPF037913.4E-23116162IPR005541KNOX2
SMARTSM011881.9E-6210231IPR005539ELK domain
PROSITE profilePS5121310.476210230IPR005539ELK domain
PfamPF037892.4E-9211231IPR005539ELK domain
PROSITE profilePS5007112.034230293IPR001356Homeobox domain
SuperFamilySSF466895.13E-19232302IPR009057Homeodomain-like
SMARTSM003891.7E-11232297IPR001356Homeobox domain
CDDcd000862.98E-14233294No hitNo description
Gene3DG3DSA:1.10.10.607.0E-26235295IPR009057Homeodomain-like
PfamPF059201.6E-16250289IPR008422Homeobox KN domain
PROSITE patternPS000270268291IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEFYRLDTL VQGSDDMVRV ESITGAASTA DADDDNDFQG SLNDLVRSGS GRFMESGEGS  60
EMSDLIKTQI ATHPLYPQLV SAYLECQKVG APPEIATLLE EIGRDQKRRT GACAEFGADP  120
ELDEFMESYC KVLNTYKEEL SKPFDEATIF LSNIESQLSN LCIDASTAFR SGHCISDEVG  180
GSSEEELSCG EVEAPEGQEY LFGMPPCDKN LKEVLLRKYS GYLSSLRKEF LKKRKNGKLP  240
KDARMTLLNW WNSHYRWPYP TEEEKLKLSE VTGLDQKQIN NWFINQRKRH WKPSEDMRFA  300
LMEGVNSGIG VPTYFDTGGG GQE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225234LRKEFLKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03292.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024132.10.0PREDICTED: homeobox protein knotted-1-like 1
SwissprotQ9FP292e-98KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A059B4I10.0A0A059B4I1_EUCGR; Uncharacterized protein
STRINGXP_010024132.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-83KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]