PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03091.1.p
Common NameEUGRSUZ_H03091, LOC104414523
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 139aa    MW: 15527 Da    PI: 7.508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-191767255
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++g
  Eucgr.H03091.1.p 17 RYRGVRRRP-WGKFAAEIRD----SaRHgARVWLGTFNTAEEAARAYDRAAYNMRG 67
                      6********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-151767IPR001471AP2/ERF domain
CDDcd000186.49E-181776No hitNo description
Gene3DG3DSA:3.30.730.103.4E-311777IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-231777IPR016177DNA-binding domain
PROSITE profilePS5103224.1181775IPR001471AP2/ERF domain
SMARTSM003804.2E-361781IPR001471AP2/ERF domain
PRINTSPR003679.2E-121829IPR001471AP2/ERF domain
PRINTSPR003679.2E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDEEDSKGKD TSQPEVRYRG VRRRPWGKFA AEIRDSARHG ARVWLGTFNT AEEAARAYDR  60
AAYNMRGQTA VLNFPHEYPS SANPSSSAAS SSSASAWRAA EARPTGSSER GRPVFEFECY  120
DDKLLEELLE YEEKKGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-3651382130Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03091.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023972.13e-97PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC54e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059B3B37e-96A0A059B3B3_EUCGR; Uncharacterized protein
STRINGXP_010023972.11e-96(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]