PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H03090.1.p
Common NameEUGRSUZ_H03090, LOC104414522
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 146aa    MW: 16813.6 Da    PI: 6.9782
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H03090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-202071256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +g+++AeIrdp   +   +r +lg+f+taeeAa+a+++a+  ++g+
  Eucgr.H03090.1.p 20 RYRGVRRRP-WGKYAAEIRDP---NrSGARQWLGTFDTAEEAARAYDRAAFGMRGH 71
                      6********.**********9...4233***********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.64E-272079No hitNo description
PROSITE profilePS5103224.3682078IPR001471AP2/ERF domain
SMARTSM003802.2E-352084IPR001471AP2/ERF domain
PfamPF008475.4E-142071IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-242080IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-322080IPR001471AP2/ERF domain
PRINTSPR003673.2E-112132IPR001471AP2/ERF domain
PRINTSPR003673.2E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEDDHNRGKR QQEKDQEEVR YRGVRRRPWG KYAAEIRDPN RSGARQWLGT FDTAEEAARA  60
YDRAAFGMRG HMAILNFPHE YYQKVMGSPP YPPGIAASMA GSSGSSSSGH NTKERGKEKE  120
VFEFEYLDDR ILEELLEQEE ERKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-331713111114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H03090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023971.11e-104PREDICTED: ethylene-responsive transcription factor ERF098
SwissprotQ9LTC51e-47ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059B3Z21e-103A0A059B3Z2_EUCGR; Uncharacterized protein
STRINGXP_010023971.11e-103(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]