PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H02675.1.p

Common Name

EUGRSUZ_H02675, LOC104414278

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HSF

Protein Properties

Length: 487aa MW: 54320.4 Da PI: 6.2918

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H02675.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.5	2.5e-34	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+ye+++d+ ++e++ ws++++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+ll Eucgr.H02675.1.p 20 FLMKTYEMVDDAGTDEIVAWSSSKTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDKKHLL 103 9**************************************************************999.........************ PP XXXXXXX CS HSF_DNA-bind 95 ekikrkk 101 ++i+r+k Eucgr.H02675.1.p 104 KNIHRRK 110 ***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	7.0E-37	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.31E-34	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.0E-59	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.2E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MDAAPPGGGG GGGGGGPAPF LMKTYEMVDD AGTDEIVAWS SSKTSFVVWN PPEFARLLLP 60 TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEEFVKDKK HLLKNIHRRK PIHSHSQPQG 120 SMVDSERAAY EEELEKLNRD KSALEAKIVR LKQQQSIGKL HMGELFQRVG GMERRQEDLL 180 AFLEKNLQNP NFVEHLTRKV KSLDLSAYKK KRRLPHTDHG RPGAENSLDT HSSSRLELGN 240 IFQQDFSNKL RLELSPAVSD INLVSNSTHS SYEDGGSPRR ITSESDPKDA PMGTESLLSA 300 PEAVELSDTG TSFTFKMDSS MQRKPPVDES PRMHPLPMNL TTEEGDNNVS CQLNLSLASS 360 LLQVDHSQQF NRLNVLGSET SKSPDARSNA SITESGFGVL QKNKNSDEER TNSSLPEAQN 420 NNQPIAPASG RINDVFWEQF LTERPGALEN EEACSSYREN SYDVHGDQRP GPGMSRNSKS 480 MERLTL*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MDAAPPGGGG GGGGGGPAPF LMKTYEMVDD AGTDEIVAWS SSKTSFVVWN PPEFARLLLP  60
TYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEEFVKDKK HLLKNIHRRK PIHSHSQPQG  120
SMVDSERAAY EEELEKLNRD KSALEAKIVR LKQQQSIGKL HMGELFQRVG GMERRQEDLL  180
AFLEKNLQNP NFVEHLTRKV KSLDLSAYKK KRRLPHTDHG RPGAENSLDT HSSSRLELGN  240
IFQQDFSNKL RLELSPAVSD INLVSNSTHS SYEDGGSPRR ITSESDPKDA PMGTESLLSA  300
PEAVELSDTG TSFTFKMDSS MQRKPPVDES PRMHPLPMNL TTEEGDNNVS CQLNLSLASS  360
LLQVDHSQQF NRLNVLGSET SKSPDARSNA SITESGFGVL QKNKNSDEER TNSSLPEAQN  420
NNQPIAPASG RINDVFWEQF LTERPGALEN EEACSSYREN SYDVHGDQRP GPGMSRNSKS  480
MERLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-21	5	109	15	129	Heat shock factor protein 1
5d5v_B	3e-21	5	109	15	129	Heat shock factor protein 1
5d5v_D	3e-21	5	109	15	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	212	KKKRR
2	208	213	KKKRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H02675.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010023648.1	0.0	PREDICTED: heat stress transcription factor A-5 isoform X2
Swissprot	Q94BZ5	1e-150	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A059B1H6	0.0	A0A059B1H6_EUCGR; Uncharacterized protein
STRING	XP_010023648.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-146	HSF family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H02675.1.p
Entrez Gene	104414278

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]