PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02544.1.p
Common NameEUGRSUZ_H02544
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 182aa    MW: 21140.1 Da    PI: 8.6305
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02544.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-101281622155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yp+++++  LAk++gL+++q+ +WF N+R ++
  Eucgr.H02544.1.p 128 KWPYPTEADKIALAKSTGLDQKQINNWFINQRKRH 162
                       579*****************************885 PP
2ELK28.82.8e-1082103122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       +LK++LlrK++ ++++Lk EFs
  Eucgr.H02544.1.p  82 DLKDRLLRKFGNHISTLKLEFS 103
                       69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.0E-682103IPR005539ELK domain
PROSITE profilePS512139.63882102IPR005539ELK domain
SMARTSM011886.9E-582103IPR005539ELK domain
PROSITE profilePS5007112.762102165IPR001356Homeobox domain
SuperFamilySSF466891.71E-19103175IPR009057Homeodomain-like
SMARTSM003891.2E-13104169IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-28107166IPR009057Homeodomain-like
CDDcd000862.44E-12114166No hitNo description
PfamPF059202.3E-17122161IPR008422Homeobox KN domain
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MYQKGAWEGL RITPVTWGEM ARMRFRFAVE LLHCNCCCFT FLLEVSGNDE MRPNEGDASS  60
DEDFSGGEVE APETQPRGED RDLKDRLLRK FGNHISTLKL EFSKKKKKGK LPKEARQTLL  120
EWWSVHNKWP YPTEADKIAL AKSTGLDQKQ INNWFINQRK RHWKPSENMQ FALMDSIPGQ  180
Y*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02544.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023500.15e-89PREDICTED: homeobox protein knotted-1-like 6
RefseqXP_010023501.15e-89PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS65e-57KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A059B1M51e-134A0A059B1M5_EUCGR; Uncharacterized protein
STRINGXP_010023500.12e-88(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-51KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]