PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H02293.1.p

Common Name

EUGRSUZ_H02293, LOC104457394

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 243aa MW: 25868.4 Da PI: 7.9239

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H02293.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.5e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ ++ Eucgr.H02293.1.p 2 SCNGCRVLRKGCSESCILRPCLqwieaPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWPVC 94 6****************************************************************************************** PP DUF260 89 qlkaelall 97 q+++e++l+ Eucgr.H02293.1.p 95 QAAVETVLR 103 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.618	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIEAPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WPVCQAAVET VLRGGSLRAM PELLDGGGGG 120 GGSLPASDEA SEAGDTCADA WKLRDPNPGS RFSTSRSRIS PKRKRLDAAA DNAKLLLQPM 180 DLDLRLTPTD FQAKTKPAVK AEHQTRRPGT PSMTSEESGT TTCFESNNNV GEPETKLLNL 240 FA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H02293.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010070643.1	1e-178	PREDICTED: LOB domain-containing protein 38
Swissprot	Q9SN23	6e-91	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A059AZY7	1e-176	A0A059AZY7_EUCGR; Uncharacterized protein
STRING	XP_010070643.1	1e-177	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-83	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Eucgr.H02293.1.p
Entrez Gene	104457394