PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H02094.1.p | ||||||||
Common Name | EUGRSUZ_H02094, LOC104457305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17051.1 Da PI: 4.9891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Eucgr.H02094.1.p 18 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 67 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 18 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 18 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.97 | 18 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-11 | 19 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-26 | 19 | 77 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 19 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 57 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEGEGGGERK RGVAVERPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST PVAAARAYDT 60 AVFYLRGPSA RLNFPESVAA AAAEEEGEAG GGDMSADTIR KKAAEVGARV DAALISSEMK 120 READDKEGGD DDQFKKCVGV LERVDLNKMP EDPEDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 11 | 76 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H02094.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010070562.1 | 1e-108 | PREDICTED: ethylene-responsive transcription factor ERF008 | ||||
Swissprot | O22174 | 6e-55 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A059AZU3 | 1e-107 | A0A059AZU3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010070562.1 | 1e-107 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 4e-53 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H02094.1.p |
Entrez Gene | 104457305 |
Publications ? help Back to Top | |||
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