PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H02009.1.p
Common NameEUGRSUZ_H02009, LOC104457276
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 499aa    MW: 55517.4 Da    PI: 7.7568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H02009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-18131219197
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k+l++s+v++  ++ lp  f+++h  +  +++t++lede g+++e+k+i  k++    l++GW++F   ++L egD++vF+l++ ++f  +
  Eucgr.H02009.1.p 131 FIKALVRSHVGSCFWMGLPGVFCRAHLPN--KDTTIVLEDEYGKQYEMKYIAHKTG----LSAGWRQFSVGHNLLEGDVLVFQLVEPNKF--K 215
                       89************************634..6789***************655555....***********************9987777..7 PP

                       EEEE CS
                B3  94 vkvf 97 
                       v ++
  Eucgr.H02009.1.p 216 VYII 219
                       7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-21123221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-23124221IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-27129220No hitNo description
PfamPF023625.7E-16131220IPR003340B3 DNA binding domain
SMARTSM010196.3E-22131222IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MAAGQVKTEM QDEGPQATAP APAPEELRNL KLPAEGGVTL ALLSPTSASR AKADAGSSSM  60
VRVRRRKGTI LKIKMKDSGS QVVSDRSRKS LSFKKSKTAL DGTLDPGEVK SGAMVRAEEV  120
QSNLEPTYPS FIKALVRSHV GSCFWMGLPG VFCRAHLPNK DTTIVLEDEY GKQYEMKYIA  180
HKTGLSAGWR QFSVGHNLLE GDVLVFQLVE PNKFKVYIIK AGNLAEVDGA LGLLNLDAPS  240
KKAEAEDGTN HEASARQPRR RRGSSLPLAI VQKRRKKSDQ QKSTPNPECL VEQSENDSEG  300
VNSEVLEGFK LSLPDVQFKD VDSFSNFHIV IDGMVVNSEL SEDILRKYYE LCRSQNVFLH  360
ENLLKGMNYK LIVGIICETV HVADAVRACK ITTTREEFET WDKTLKAFKI LGMNVGFVRA  420
RLKQLVGLAF ESEMAMETQK YVESKRNRDC ADEEISNLEA RLLELKEDNR RVSAEIECLK  480
PKVESYELKF QEEVTAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259276RRRGSSLPLAIVQKRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H02009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070516.10.0PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBLA0A059AZB60.0A0A059AZB6_EUCGR; Uncharacterized protein
STRINGXP_010070516.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-35B3 family protein