PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H01990.1.p

Common Name

EUGRSUZ_H01990

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 403aa MW: 43230.4 Da PI: 9.0941

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H01990.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.8e-39	121	179	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+s Eucgr.H01990.1.p 121 PENLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSS 179 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.0E-32	123	178	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-25	124	174	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.441	124	178	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	126	162	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSATLGEDDD EHLRHMTLRR QKAIQLNFLG QANIHPKRGE KKMIQELLGS PALIGERKIS 60 MNHGAVILEG MPSPSPCFSP SPTPSPPSSS SSAITKTTAQ ATATATTTGN GTSTTTNSSN 120 PENLRCPRCD SANTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKNKSSA 180 VSSSASKSSA SKFKNLSSEI GRSSFVSAFD PEISQSQVLW ASPQSSHILA LLRANQNPNP 240 SSLGHQASPF MTLKEETNLI GNHMMPEPGI AESAMNNARN LGMIDPLIHV PSSCTSFLRG 300 NHQQIPHQLN HHQQNGIILS GEAQNSGIQS LYQRLRASTG NNYGYSEHSP AILSSMASTP 360 PLSSSLSSSI LESVPATATS ELGYWNPAFC VSDLPNTNGS YP*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSATLGEDDD EHLRHMTLRR QKAIQLNFLG QANIHPKRGE KKMIQELLGS PALIGERKIS  60
MNHGAVILEG MPSPSPCFSP SPTPSPPSSS SSAITKTTAQ ATATATTTGN GTSTTTNSSN  120
PENLRCPRCD SANTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKNKSSA  180
VSSSASKSSA SKFKNLSSEI GRSSFVSAFD PEISQSQVLW ASPQSSHILA LLRANQNPNP  240
SSLGHQASPF MTLKEETNLI GNHMMPEPGI AESAMNNARN LGMIDPLIHV PSSCTSFLRG  300
NHQQIPHQLN HHQQNGIILS GEAQNSGIQS LYQRLRASTG NNYGYSEHSP AILSSMASTP  360
PLSSSLSSSI LESVPATATS ELGYWNPAFC VSDLPNTNGS YP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H01990.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010070497.1	0.0	PREDICTED: dof zinc finger protein DOF5.6
TrEMBL	A0A059AZV3	0.0	A0A059AZV3_EUCGR; Uncharacterized protein
STRING	XP_010070497.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	2e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.H01990.1.p