PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H01965.1.p | ||||||||
Common Name | EUGRSUZ_H01965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 282aa MW: 32717.5 Da PI: 9.0835 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.6 | 1.3e-19 | 15 | 105 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 fk+ sd+l++grl +pkkf++++g++ s + l sg +Wev+l ++ ++ +l++GW +Fvk ++ g f+vF+++g s f +v Eucgr.H01965.1.p 15 FKIV-LSDALQNGRLGIPKKFVRKYGSS--LSDLVFLHLASGDVWEVEL--LRGNDGAFLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RV 100 4443.59******************977..776788888**********..88888889*************************99999..99 PP EEE-S CS B3 95 kvfrk 99 +f+k Eucgr.H01965.1.p 101 VIFDK 105 99987 PP | |||||||
2 | B3 | 57.9 | 1.8e-18 | 161 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 ff + ++++ +++ l+ p +f+ ++ + +++ +++l+ ++ r W+v++++ ++++++ + GWk+Fv++n+Lk gD++vF+ +++ + Eucgr.H01965.1.p 161 FFLAIMQPSFIRHC-LSAPARFFMKYipN--FRSKGDIILYVSDERFWSVRYKFgiYGRRRQIKFNCGWKRFVQDNNLKLGDVCVFEIMWKvH 250 67777888889888.***********752..344558***************9988888888***************************9999 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +++v +fr+ Eucgr.H01965.1.p 251 QISFRVLIFRA 261 99999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-25 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-25 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.23E-18 | 12 | 104 | No hit | No description |
PROSITE profile | PS50863 | 14.452 | 13 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-20 | 14 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-16 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-23 | 154 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-22 | 155 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.38E-16 | 160 | 260 | No hit | No description |
PROSITE profile | PS50863 | 12.548 | 160 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-15 | 161 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-16 | 161 | 261 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MVGRGYFESQ TPHFFKIVLS DALQNGRLGI PKKFVRKYGS SLSDLVFLHL ASGDVWEVEL 60 LRGNDGAFLR RGWPDFVKHY AIEHGHFLVF RYEGGSAFRV VIFDKSATEI KYPLVSENDD 120 PRMEEDVGDA SVEVFEDHSD QVSEKSEALE RATSFQSPNP FFLAIMQPSF IRHCLSAPAR 180 FFMKYIPNFR SKGDIILYVS DERFWSVRYK FGIYGRRRQI KFNCGWKRFV QDNNLKLGDV 240 CVFEIMWKVH QISFRVLIFR ANGDTVEFGR GHLHVKLCFI R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H01965.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018716422.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A059B061 | 0.0 | A0A059B061_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026406.1 | 7e-94 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 3e-23 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H01965.1.p |