PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H01962.1.p | ||||||||
Common Name | EUGRSUZ_H01962 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 280aa MW: 32148.8 Da PI: 9.7223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.9 | 3.2e-17 | 18 | 94 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pkkf+ ++g++ s + l+ +sg+ Wev+l ++ ++++l++GW +Fvk +k g f+vF+++g s f +v +f+k Eucgr.H01962.1.p 18 GIPKKFVIKYGSN--LSDLVFLQVPSGQAWEVEL--VRRTDGVWLRRGWPDFVKHYAIKHGHFLVFRYEGGSAF--RVVIFDK 94 49********988..888999999**********..99999****************************99999..9999987 PP | |||||||
2 | B3 | 45.7 | 1.2e-14 | 201 | 270 | 33 | 99 |
-SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 33 sktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 + ++ l+ ++ r W ++++ +++ ++ + +GWk Fv++n+Lk+gD++vF+l+++ + +++v +fr+ Eucgr.H01962.1.p 201 GGDIDLYVSNERFWLARYKFgiYGRKTQVKINGGWKLFVQDNNLKVGDVCVFELTRKvGQVSFRVVIFRA 270 3368888999999999999987777888***************************988999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 3.8E-11 | 9 | 95 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-20 | 16 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.9E-14 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-21 | 18 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.183 | 19 | 95 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.69E-15 | 19 | 93 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-15 | 172 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-16 | 173 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-15 | 178 | 269 | No hit | No description |
SMART | SM01019 | 3.7E-10 | 179 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-12 | 201 | 270 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 204 | 271 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MHCNSPDLLF QTHTYANGIP KKFVIKYGSN LSDLVFLQVP SGQAWEVELV RRTDGVWLRR 60 GWPDFVKHYA IKHGHFLVFR YEGGSAFRVV IFDKSASEIK YPIITELPKR EENEGDTLVE 120 VFEDHFDRPL RIQSGASNIV CDVNAGLNSS CWKRERPFRG GEKSEALKRA ASFQYPNPFF 180 LTLMQPSLIR HSLHIPSYRS GGDIDLYVSN ERFWLARYKF GIYGRKTQVK INGGWKLFVQ 240 DNNLKVGDVC VFELTRKVGQ VSFRVVIFRA NHDAIELGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H01962.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026406.1 | 1e-118 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A059AZI7 | 0.0 | A0A059AZI7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026401.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 1e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H01962.1.p |