PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H01659.1.p | ||||||||
Common Name | EUGRSUZ_H01659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27039.2 Da PI: 6.9189 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 5e-20 | 116 | 165 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f tae+Aa+a+++a+++++g+ Eucgr.H01659.1.p 116 YRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEQAARAYDRAALEFRGA 165 9*******.**********82....48*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-22 | 115 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.409 | 115 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 116 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.69E-30 | 116 | 172 | No hit | No description |
PRINTS | PR00367 | 3.6E-12 | 116 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-33 | 116 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-12 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTRDDEHGIM VNALQHVISG SSSTRPEPIP AFRSSTPSHL SADGTAAEQR APGLLSLPDV 60 ATCQVCRIDG CLGCNFFAPG RVAMAVQGGG DPAKAAQALG VGQSNKSAGR KRKGFYRGVR 120 QRPWGKWAAE IRDPRRAARV WLGTFETAEQ AARAYDRAAL EFRGARAKLN FPLLPNDCTS 180 TGAGKSRDMM EDGEAEETIK ARAEGGESND VREKAPSFER DDERGASEFW EKLEKEELEQ 240 WPVMHLPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-24 | 116 | 176 | 6 | 67 | ATERF1 |
3gcc_A | 3e-24 | 116 | 176 | 6 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H01659.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003286 | 3e-36 | AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08. | |||
GenBank | AP014957 | 3e-36 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 3e-36 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010026297.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 3e-35 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A059AYI4 | 0.0 | A0A059AYI4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010026297.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-35 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H01659.1.p |
Publications ? help Back to Top | |||
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