PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01257.1.p
Common NameEUGRSUZ_H01257, LOC104456862
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 465aa    MW: 51834 Da    PI: 6.6565
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01257.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.62.6e-90984633374
              GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       + L+++Ae+++s++l+laq +Larl+++ +sp+g+p+qR+a+yf+eA ++ l+   ++ ++  p++ +s+ + ++++ a+k+fs  sPi  f+
  Eucgr.H01257.1.p  98 DELIQAAECFDSSELQLAQMILARLNQRlRSPAGKPVQRAAFYFKEAFQSLLLL--QSGSNRPPARLSSWPDIVQTIRAYKAFSGNSPISMFT 188
                       579************************99**********************998..6777888999999999********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                       h+ta qa+le+++g++  H++Dfdi+ G+Q++++++++a+R+     +pp +RiT+v+++e   + e++ ++++L+++A+el++++e +++++
  Eucgr.H01257.1.p 189 HFTAIQALLESLDGSTVFHVVDFDIGFGGQYASFMKEIADRAdsckLQPPIVRITAVVPEE--FAIETKLIRDNLSQYAHELKLRVEVEFVLV 279
                       ******************************************5554459**********66..889999************************ PP

              GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdslea 273
                       +++e+l+++++++  +E+laV+l+ ++ + l   ++ ++   ++L  v++l+P +vv+++ e  ad    +sF + fl ++e+y+++f+s+++
  Eucgr.H01257.1.p 280 RAFEMLSFKSINFIDRESLAVHLSPAILHRL---GPASN-VARFLVDVRRLNPSIVVFADTEpwADAaAPASFKRSFLGCFEHYATVFESVDV 368
                       ************************9998888...34444.568*******************887776778********************99 PP

              GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                             e+++k+E  ll+++i+ +v ++ ++         +Wre+++ aG++pv+ls++a  qa+ ll kv+++g++v  ++++lvl+W+dr+
  Eucgr.H01257.1.p 369 A-TGGGEWARKIEGYLLRPRITAAVEAAAKR-----AAPPSWREAFHGAGMRPVRLSQFADYQAEFLLGKVQVRGFHVARRQAELVLCWHDRA 455
                       9.46679999***************998887.....7799***************************************************** PP

              GRAS 367 LvsvSaWr 374
                       Lv++SaW+
  Eucgr.H01257.1.p 456 LVATSAWK 463
                       *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.11970443IPR005202Transcription factor GRAS
PfamPF035149.1E-8898463IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MQTLDWDSIM RDLGLHDDSA PPFRANPHVC PADAFPPPPP PPPHHQQQQQ QQQHHQQLEP  60
PGHFLPHEFA LSDGYSNPLD SCADSPAGWN GLGPDFFDEL IQAAECFDSS ELQLAQMILA  120
RLNQRLRSPA GKPVQRAAFY FKEAFQSLLL LQSGSNRPPA RLSSWPDIVQ TIRAYKAFSG  180
NSPISMFTHF TAIQALLESL DGSTVFHVVD FDIGFGGQYA SFMKEIADRA DSCKLQPPIV  240
RITAVVPEEF AIETKLIRDN LSQYAHELKL RVEVEFVLVR AFEMLSFKSI NFIDRESLAV  300
HLSPAILHRL GPASNVARFL VDVRRLNPSI VVFADTEPWA DAAAPASFKR SFLGCFEHYA  360
TVFESVDVAT GGGEWARKIE GYLLRPRITA AVEAAAKRAA PPSWREAFHG AGMRPVRLSQ  420
FADYQAEFLL GKVQVRGFHV ARRQAELVLC WHDRALVATS AWKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2810246224377Protein SCARECROW
5b3h_D1e-2810246224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01257.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070042.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-150SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A059AX950.0A0A059AX95_EUCGR; Uncharacterized protein
STRINGXP_010070042.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]