PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01256.1.p
Common NameEUGRSUZ_H01256, LOC104456861
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 328aa    MW: 34652.9 Da    PI: 5.0982
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.21e-24229291163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ e+eeL+ +v++L++eN++L++el +l++e++kl+se+
  Eucgr.H01256.1.p 229 ERELKRQRRKQSNRESARRSRLRKQVECEELQARVETLSNENHTLRDELHRLSEECEKLTSEN 291
                       89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.9E-27191IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1706.0E-21224289No hitNo description
SMARTSM003382.0E-23229293IPR004827Basic-leucine zipper domain
PfamPF001706.6E-22229291IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.357231294IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-12232288No hitNo description
CDDcd147021.17E-25234284No hitNo description
PROSITE patternPS000360236251IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGTGEETTAS KPSKPTSSIQ EVPTTPSYPD WSSPMQAYYA PGATPPPFFA STVASPSPHP  60
YMWGSQHPLM PPYGTPVPYS AIYPPYVHPN MAPTPVAAQT NVEPDGKGAD GRDGASAKKS  120
KVTSGNSSLV GGKAADGVKA TSGSGNDGAS QSADSGSEGS SEGNEDNSQQ EFTAGKPGVP  180
TPATNLNIGM DLWNASSAGG AAKIRPNPGA ASSTLVPTGM MPDQWMQDER ELKRQRRKQS  240
NRESARRSRL RKQVECEELQ ARVETLSNEN HTLRDELHRL SEECEKLTSE NSAIKEELTR  300
VCGPEAVANL EHDSTSALQS HGSEENS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245251RRSRLRK
2245252RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717403.10.0PREDICTED: G-box-binding factor 1 isoform X4
SwissprotP427743e-99GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A059AYU00.0A0A059AYU0_EUCGR; Uncharacterized protein
STRINGXP_010070038.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-86G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]