PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H01204.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 296aa    MW: 32624.5 Da    PI: 5.5894
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H01204.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.4e-06950439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      r C+ ++   + l+C+ +   lC  C  e H        H++
  Eucgr.H01204.1.p  9 RPCDYCGGTTALLYCRADTARLCFACDREVHATnplfakHNR 50
                      78******99*********************66777777765 PP
2zf-B_box253.9e-085182334
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +++  +++fCe  + llC++C    H
  Eucgr.H01204.1.p 51 SLLCDACDSASASFFCEAERLLLCQNCDWDRH 82
                      568************************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.5E-12653IPR000315B-box-type zinc finger
CDDcd000212.52E-5953No hitNo description
PROSITE profilePS501199.5271153IPR000315B-box-type zinc finger
PROSITE profilePS501199.5564982IPR000315B-box-type zinc finger
PfamPF006431.3E-55182IPR000315B-box-type zinc finger
CDDcd000212.27E-75382No hitNo description
SMARTSM003360.765499IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAKGGGGKRP CDYCGGTTAL LYCRADTARL CFACDREVHA TNPLFAKHNR SLLCDACDSA  60
SASFFCEAER LLLCQNCDWD RHDAARGRGG GGVHTRSRWD DGGAGRRRGW WVLGCLLWDT  120
PAFVTLDDLI VPREDACALR AVDVPPLPKN RNATCGLHMK EMLRQLRLLA KPEYNFNFEE  180
GEIEPLDDFH LPVLTQALQP ANIHTGCEDR DQVGFHKIEA TDFQWFSNDG NTRNQAYDAS  240
SFSGGYKEER PTALDKYPNG SILSSTNECH EVPSENSINP NPLPLVPSFA SGSIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H01204.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715757.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A059AXS31e-144A0A059AXS3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010026143.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.21e-48B-box type zinc finger protein with CCT domain