PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H01085.1.p | ||||||||
Common Name | EUGRSUZ_H01085, LOC104456734 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 311aa MW: 34006.7 Da PI: 6.0571 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 67 | 115 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Eucgr.H01085.1.p 67 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 115 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-37 | 66 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 66 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 66 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 66 | 124 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.12E-31 | 67 | 124 | No hit | No description |
Pfam | PF00847 | 6.4E-12 | 67 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-12 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-12 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MCGGAIIAEF IPRNRRRVTS SDLWPDSLFL KPSNGLDDPL PPKQHPCPAS GGAQEEKAPK 60 KPRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA RKIRGKKAKV 120 NFPNEDDAFS TIPRAHQTQH HHHPQVPDYP PLYQPNWNNN GAPAKTLDLA FAYDLNQTGH 180 FPANGYAPIH AEPVAMSSEE ISGSGSEDTH ASSTAALLGA NYGAAEAKVK AEGEVGKKKE 240 EDEESEVQKL SEELLAFENY MKFYQIPYLD GQSAAAPPNP AQDSVVGELW AFDDDNDNAS 300 GVTAVAPAAL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 67 | 132 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H01085.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069891.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
Swissprot | O22259 | 8e-38 | ERF71_ARATH; Ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A059AXD1 | 0.0 | A0A059AXD1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069891.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H01085.1.p |
Entrez Gene | 104456734 |
Publications ? help Back to Top | |||
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