PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H01007.1.p

Common Name

EUGRSUZ_H01007, LOC104456678

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 290aa MW: 32321.4 Da PI: 4.4399

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H01007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	54	112	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v+++tY+++Hnh+ Eucgr.H01007.1.p 54 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASVLVVTYTSTHNHP 112 699*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-31	43	114	IPR003657	WRKY domain
SuperFamily	SSF118290	8.37E-26	49	114	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	53	113	IPR003657	WRKY domain
PROSITE profile	PS50811	30.779	54	114	IPR003657	WRKY domain
Pfam	PF03106	7.1E-25	55	112	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAADSIAPKL DMDDPEGAKP EGQASKRRKL VHKTVVRVKI EANVVKQKNE GPPSDFWSWR 60 KYGQKPIKGS PYPRGYYRCS TSKGCSAKKQ VERCKTDASV LVVTYTSTHN HPGPDIHSLN 120 PTVQPSEADD DPEETAVAVA VSPAVSAQEE VPEQDQDQED QDQEQHLDLG DKQDRDRHTH 180 VAIDEADRAR EDNFHYLRSP TNCSSQDLVM EQDDTLAPQL QVYEEPLVSC SREDPSGVGA 240 APVPPEPEPE PEEGHDFFDE LEELPVFSYF ANLNRINHFI DDRIPVVPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	54	114	17	79	Disease resistance protein RRS1
5w3x_D	1e-20	54	114	17	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H01007.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069834.1	0.0	PREDICTED: probable WRKY transcription factor 68
Swissprot	O04609	2e-33	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	A0A059AY08	0.0	A0A059AY08_EUCGR; Uncharacterized protein
STRING	XP_010069834.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15371	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-35	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Eucgr.H01007.1.p
Entrez Gene	104456678

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]