PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00826.1.p
Common NameEUGRSUZ_H00826
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 197aa    MW: 22868.8 Da    PI: 6.3034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00826.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.38.9e-3451332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       p GfrFhPt+eelv++yL  kv++ + +   vi+e+ d y ++PwdLp+      +v ++  +w+f +++   ++++++ +r+t+sg Wk t 
  Eucgr.H00826.1.p   5 PLGFRFHPTEEELVNHYLMGKVQRYTDSW--VIPELeDFYAWDPWDLPRlypgilNVPSDGWDWFFICPSPYVAQNSEHVKRKTRSGHWKITC 95 
                       89**********************99777..899998***********6578776666677799***************************** PP

               NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  +++++ ++ l+g+k++Lvfykg+    +kt Wvmhey+l
  Eucgr.H00826.1.p  96 RRDDIKDRdTKVLIGTKRILVFYKGH----TKTGWVMHEYHL 133
                       *******956667**********654....4889*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-373157IPR003441NAC domain
PROSITE profilePS5100537.1154157IPR003441NAC domain
PfamPF023658.1E-245133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDQFPLGFRF HPTEEELVNH YLMGKVQRYT DSWVIPELED FYAWDPWDLP RLYPGILNVP  60
SDGWDWFFIC PSPYVAQNSE HVKRKTRSGH WKITCRRDDI KDRDTKVLIG TKRILVFYKG  120
HTKTGWVMHE YHLNPELLSG YSSTLQIPYI LCRLKRKPSE SLDTFPSFGG VSSVTDNTPV  180
ASQHESTEDA DQEVSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-19416117169NO APICAL MERISTEM PROTEIN
1ut4_B3e-19416117169NO APICAL MERISTEM PROTEIN
1ut7_A3e-19416117169NO APICAL MERISTEM PROTEIN
1ut7_B3e-19416117169NO APICAL MERISTEM PROTEIN
3swm_A3e-19416120172NAC domain-containing protein 19
3swm_B3e-19416120172NAC domain-containing protein 19
3swm_C3e-19416120172NAC domain-containing protein 19
3swm_D3e-19416120172NAC domain-containing protein 19
3swp_A3e-19416120172NAC domain-containing protein 19
3swp_B3e-19416120172NAC domain-containing protein 19
3swp_C3e-19416120172NAC domain-containing protein 19
3swp_D3e-19416120172NAC domain-containing protein 19
4dul_A3e-19416117169NAC domain-containing protein 19
4dul_B3e-19416117169NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00826.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010026029.11e-124PREDICTED: protein NTM1-like 9
TrEMBLA0A059AW671e-145A0A059AW67_EUCGR; Uncharacterized protein
STRINGXP_010026029.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3456522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-38NAC transcription factor-like 9