PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00815.1.p
Common NameEUGRSUZ_H00815
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 696aa    MW: 77470.7 Da    PI: 6.3218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00815.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.83.8e-135856612295
                       H.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                B3  22 faeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                        ae+h  +++ + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv+angL+egDf+v++  ++ ++++++++
  Eucgr.H00815.1.p 585 EAETHlpELEARDGISIAMEDiGTSKVWNMRYRFwpNNKSRMYLLE-NTGDFVRANGLEEGDFIVIY--SDvKCGKYLIR 661
                       5777888888889999*****7777*******99777777777777.********************..55599988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.5E-7573666IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17583672IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-14584658IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-9592660IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEAEQVVANS GDPGREMWLD KQEEEEENLL NANEAASVFY SDFPLPDFPC MSSSSSSSST  60
RAPVKATTCS SSSSSSASSS SSAASWAVLR SEDTAAENME NRKNSRRSDY CDDNSNHIFQ  120
HAREADAPSR ALSSTASMEI ILENPVDQAS TDAVGSCIDA IDTFGYMDLL ENNDFFDPAS  180
LFQSELLLEE EFQNQEPEAQ LAEQQNQRAQ ATSAEADSGN RTGPVSDEMG AVLLEWLTEN  240
KDDISPDDLR RIKIKKATVE TAAKRLGGGR EAMKQLLKLI LQWVQTNHLH KKRLKEAASV  300
SASVSASQVP YQYQEPFHHH QNPNPNLSFS PEPNGLHPQS FPHQPQWIPP PPPYVACPTP  360
MMEVPPPPPG YCPAPGYMGD PAYSHGAPPD HLSGNPFPPE YQMINSAQSW PMSQFSMAAQ  420
PYDYPENFHP PPQAQGLRGY QHHQYPFQYY NGHGQRLIRL GSSATKEARK KRMARQRRFL  480
SHHRSSHHHH QQSNQQGNHQ SMAVAAEQHA RLGGENCAIP EAAHQAHNHP GSWVYWPSPA  540
HAGQVAVPPS LPAMDPVQVA HPADQPAMQQ QNYQRQVAPE RRQKEAETHL PELEARDGIS  600
IAMEDIGTSK VWNMRYRFWP NNKSRMYLLE NTGDFVRANG LEEGDFIVIY SDVKCGKYLI  660
RGVKVRQPEG TKPEAHKRPE KSQRSAHASS SQKKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-2757466918110B3 domain-containing transcription factor FUS3
6j9b_D5e-2757466918110B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00815.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715725.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLA0A059AXC80.0A0A059AXC8_EUCGR; Uncharacterized protein
STRINGXP_010026024.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-69B3 family protein