PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.H00614.1.p

Common Name

EUGRSUZ_H00614, LOC104456413

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 247aa MW: 28239.3 Da PI: 4.5001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.H00614.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.1	2.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yLk+k++g+++el ++i+e+d+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++ Eucgr.H00614.1.p 6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEIDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRK 97 79**************************.99**********84335556888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +++ +g+kktLv+y+grap+g++tdWvmheyrl Eucgr.H00614.1.p 98 VTS-QNRPIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 133 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-65	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.827	6	156	IPR003441	NAC domain
Pfam	PF02365	9.1E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAPLGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE IDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRKVTS QNRPIGMKKT LVYYRGRAPQ 120 GVRTDWVMHE YRLDDKESED TSGMQDSYAL CRVFKKNGFG NEVEDQGQWS LSLMESSQGV 180 VMSQEWENNS PDVPIASSSC LDQEDDKDDS WMQFITDDGG WGTSNPNAPP IGGDFGEEVS 240 TLNFSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-56	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.H00614.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010069496.1	0.0	PREDICTED: NAC domain-containing protein 86
Swissprot	Q9FFI5	1e-87	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A059AW31	0.0	A0A059AW31_EUCGR; Uncharacterized protein
STRING	XP_010069496.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-114	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Eucgr.H00614.1.p
Entrez Gene	104456413

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]