PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.H00609.1.p | ||||||||
Common Name | EUGRSUZ_H00609, LOC104456408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78575.1 Da PI: 6.5979 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.2e-21 | 20 | 75 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r eL+++lgL rq+k+WFqNrR+++k Eucgr.H00609.1.p 20 KKRYHRHTAHQIQRLEAMFRECPHPDEKQRMELSRELGLAPRQIKFWFQNRRTQMK 75 688999***********************************************998 PP | |||||||
2 | START | 170.1 | 1.4e-53 | 218 | 442 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a a++e++++a+ +ep+W+ks +++n + + + f+++ + ++ea+r+s+vv m+ l +++++ +W e ++ +a+ Eucgr.H00609.1.p 218 IAANALDEFLRLAQTDEPLWMKSTtdgrDNLNLESYERMFPRASShlknpdVRVEASRESRVVMMNGLALIDMFMNSN-KWAELFPaivsAAK 309 577899*********************99999999999999988899***99**************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 t+evis+g g lqlm+ elq+lspl p R+f+f+Ry++q + g w+ivdvS d ++ + + R+++lpSg+li++++ng+skvtw Eucgr.H00609.1.p 310 TIEVISPGlltsqnGSLQLMYEELQVLSPLIPtREFYFLRYCQQIEPGLWAIVDVSFDLSRYDQ-FAFQSRSQRLPSGCLIQDLPNGYSKVTW 401 ***************************************************************9.79999*********************** PP EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 vehv+ ++++p h l+r l+ sgla+ga +w atl+r ce+ Eucgr.H00609.1.p 402 VEHVEIEDKTPvHRLYRDLIYSGLAFGAERWIATLERMCER 442 ***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-21 | 6 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 9 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.172 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-20 | 18 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-18 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-18 | 20 | 78 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 52.047 | 208 | 445 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.37E-34 | 209 | 443 | No hit | No description |
CDD | cd08875 | 1.74E-116 | 212 | 441 | No hit | No description |
SMART | SM00234 | 7.6E-47 | 217 | 442 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-46 | 218 | 442 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.1E-7 | 278 | 436 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.46E-23 | 463 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MDFGGGSGGD HDGSDHQKRK KRYHRHTAHQ IQRLEAMFRE CPHPDEKQRM ELSRELGLAP 60 RQIKFWFQNR RTQMKAQHER ADNCALRAEN DRIRCENIVI REALRNVICP SCGTVPSGED 120 SYFDEQKLRM ENAHLKEELD RVSSIAAKYI GRPMSQLPPV QPIHIASLDL TMSSLGAHGL 180 AGPSLDLDLL PGSSSSVPHL PFQAVVFSDM DKSLMADIAA NALDEFLRLA QTDEPLWMKS 240 TTDGRDNLNL ESYERMFPRA SSHLKNPDVR VEASRESRVV MMNGLALIDM FMNSNKWAEL 300 FPAIVSAAKT IEVISPGLLT SQNGSLQLMY EELQVLSPLI PTREFYFLRY CQQIEPGLWA 360 IVDVSFDLSR YDQFAFQSRS QRLPSGCLIQ DLPNGYSKVT WVEHVEIEDK TPVHRLYRDL 420 IYSGLAFGAE RWIATLERMC ERIACLMVTG SSTRDTRGVI PSPDGKRSMM KLAQRMVNNF 480 CSSISTSSSR QQRWTTLSGS SEVGVRVALH KSTDPGQPNG VVLSAATTIW LPLSPQNVFN 540 FFKDERTRAQ WDVLSNGNAV QEVAHLANGS HPGNCISVLR AFNTSQNNML ILQESCIDSS 600 GSLIVYCPVD LPAINLAMSG EDPSYIPLLP SGFTISPDGG PDPGDGASSS SAAAAGQGST 660 SRSAGSLMTV AFQILVSSLP SAKLNLESVT TVNNLISTTV HQIKAALNCP GS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.H00609.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069492.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A059AW26 | 0.0 | A0A059AW26_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069492.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.H00609.1.p |
Entrez Gene | 104456408 |