PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.H00574.1.p | ||||||||
Common Name | EUGRSUZ_H00574, LOC104456384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 434aa MW: 48571.9 Da PI: 8.9077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Eucgr.H00574.1.p 63 YVCEICNQGFQRDQNLQMHRRRH 85 9*********************9 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ Eucgr.H00574.1.p 140 WVCERCSKGYAVQSDYKAHLKTC 162 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.86E-5 | 62 | 85 | No hit | No description |
SMART | SM00355 | 0.0052 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.021 | 63 | 81 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 131 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.86E-5 | 135 | 160 | No hit | No description |
SMART | SM00355 | 100 | 140 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 434 aa Download sequence Send to blast |
MIGNNAIISN PPSVPPPSDP FPDCLENNGN TTNKRKRRPA GTPDPDAEVV SLSPKTLLES 60 DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRETPAVR KRVFVCPEPS CLHHDPGHAL 120 GDLVGIKKHF RRKHSNHKQW VCERCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES 180 FIEHQDSCNM GRLGSDSHHN NLQPPCLSRT ASSPSPSSDT NLNTPSWPTT RALALPKPAK 240 DATIFSNPIV NKPSPKKDHH DDLHNLELQL STSSNPTETI STNLPKRDEK YPPHLQLSIS 300 SLCTDCACER NSDCSRDQST NQLRMAMAEK AYADEARQVA KRQIEQAERE LANAKRMRQQ 360 AQAELQKAHA LKEHARKKMS SAILQITCQV CKQKLQAREL LRLAPGHESS LALSYMSSAI 420 TEGEVDNDIN RVC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 136 | 189 | 3 | 56 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 136 | 189 | 3 | 56 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.H00574.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK106796 | 9e-72 | AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence. | |||
GenBank | AK119595 | 9e-72 | AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence. | |||
GenBank | AP004585 | 9e-72 | AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03. | |||
GenBank | AP006461 | 9e-72 | AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02. | |||
GenBank | AP014964 | 9e-72 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT833680 | 9e-72 | CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010069464.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5 | ||||
Refseq | XP_018717493.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-144 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A059AV35 | 0.0 | A0A059AV35_EUCGR; Uncharacterized protein | ||||
STRING | XP_010069464.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-139 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.H00574.1.p |
Entrez Gene | 104456384 |
Publications ? help Back to Top | |||
---|---|---|---|
|