PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.H00552.1.p
Common NameEUGRSUZ_H00552
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-X1
Protein Properties Length: 1119aa    MW: 121132 Da    PI: 7.7298
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.H00552.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.93.7e-07308326119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C+++CH GpC+pC+
  Eucgr.H00552.1.p 308 CGRHRCKQICHVGPCDPCQ 326
                       ******************6 PP
2zf-NF-X118.44.7e-06372389118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H C k CH+GpC++C
  Eucgr.H00552.1.p 372 CGNHMCDKFCHPGPCGEC 389
                       ****************** PP
3zf-NF-X118.64.1e-06524542119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H+C++lCH G CppC 
  Eucgr.H00552.1.p 524 CGQHSCESLCHSGHCPPCL 542
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.71E-7131201No hitNo description
PROSITE profilePS500168.956138199IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.642141197IPR001841Zinc finger, RING-type
PROSITE patternPS013590141196IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.23E-5230291No hitNo description
SMARTSM004380.29253271IPR000967Zinc finger, NF-X1-type
PfamPF014228.4255270IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-10298346No hitNo description
SMARTSM004382.7E-4308327IPR000967Zinc finger, NF-X1-type
PfamPF014227.8E-6308325IPR000967Zinc finger, NF-X1-type
CDDcd060085.43E-8362404No hitNo description
SMARTSM004380.0084372391IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-4372389IPR000967Zinc finger, NF-X1-type
CDDcd060081.01E-12420468No hitNo description
SMARTSM004384.1E-4430449IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4430448IPR000967Zinc finger, NF-X1-type
CDDcd060081.74E-4476535No hitNo description
SMARTSM00438170486516IPR000967Zinc finger, NF-X1-type
PfamPF0142218486497IPR000967Zinc finger, NF-X1-type
CDDcd060084.55E-9514557No hitNo description
SMARTSM004382.0E-4524543IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4524541IPR000967Zinc finger, NF-X1-type
CDDcd060088.11E-6571619No hitNo description
SMARTSM004380.046581599IPR000967Zinc finger, NF-X1-type
PfamPF0142235581598IPR000967Zinc finger, NF-X1-type
SMARTSM004380.52634665IPR000967Zinc finger, NF-X1-type
PfamPF014220.4634649IPR000967Zinc finger, NF-X1-type
CDDcd060087.35E-5663712No hitNo description
PfamPF0142214667693IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4674695IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3308.8E-5913964IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MNHHARNNRR PRMPAQSARQ EWVPRGSVPN GPPANPPAPA NLNPSSDDGN FPSDSGHASS  60
FRAFPPDSGH RGNLRGNNGF ANHSSGPRGN HGPRGHPARP LNQRREKEKA EFSGDRVSND  120
PNLPQLVQEI QEKLMKGTVE CMICYDMVRR SAPIWSCSSC YSIFHLNCIK KWARAPTSVD  180
LSAEKNQGGN WRCPGCQHVQ LTSSKEIRYM CFCGKRTDPP SDLYLTPHSC GEPCGKPLEK  240
DILQPGEKEE DFCPHLCVLQ CHPGPCPPCK AFAPPRLCPC GKETITTRCS DRRSVLTCGK  300
CCDKLLECGR HRCKQICHVG PCDPCQVLLN ASCFCRKNIE VVLCGDMAMK GEVDAESGVF  360
SCNSTCEKLL SCGNHMCDKF CHPGPCGECD LLPGRIKTCY CGKMNLMDER QNCLDPIPTC  420
SQGCDKLLPC GTHFCAEMCH AGICPPCPEN VAQKCRCGLT SRTVECHRTR EEIFTCDKPC  480
GRKKNCGRHR CSERCCPLSN SSNLPLGDWD PHLCSMVCGK KLRCGQHSCE SLCHSGHCPP  540
CLETIFTDLT CACGRTSIPP PLPCGTPPPS CQLPCLIPQP CGHSSTHSCH FGDCPPCSVP  600
VAKECIGGHV VLRNIPCGSK DIRCNKTCGK TRQCGLHACG RTCHPLPCDS DNSASETSLK  660
VSCGQVCGAP RRDCRHTCKA PCHPSASCPD ARCDSPVTIT CSCGRITASV PCDAGGANGN  720
FSTDTVFEAS IMQKLPVPLQ PVEATGKRIP LGQRKLVCDD DCAKVERKRV LADAFDINPP  780
NLETLHFGEH SYLSESVVDL FRRDSKWVLA VEERCKFLVL GKGRGSATSL KVHVFCPMLK  840
EKRDAVRLIA ERWKLVVSAA GWEPKRFVVL HATSKSKVPA RVLGGRGSIT SNVPHPPTFD  900
PLVDMDPRLV VSFLDLPREA DISALVLRFG GECELVWLND KNALAVFSDP ARAATALRRL  960
DHGTAYYGAV VLQNGSAASS LTMPNAWGGA GPAKEGASIG AIKGNPWKRA VVQEVSDWKE  1020
DSWGGEGWSI DSQSSILKEK EAPISASVNR WSVLDSENAT SSSAPLVGKE INSIKFEDQV  1080
VVGPESKAGG SSSEGTQGLV SSGVEATEVV DDWEEACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.H00552.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069436.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A059AWH80.0A0A059AWH8_EUCGR; Uncharacterized protein
STRINGXP_010069436.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1