PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G03183.1.p | ||||||||
Common Name | EUGRSUZ_G03183, LOC104454496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 560aa MW: 61166.2 Da PI: 5.8089 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 2e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Eucgr.G03183.1.p 40 KGPWTSAEDAILVDYVKKHGEGNWNAVQKFSGLSRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.6e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+v++++++G++ W++ a++++ gRt++++k++w++ Eucgr.G03183.1.p 93 KGAFSAEEERLIVELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.397 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.4E-30 | 39 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 41 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.813 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.93E-12 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 96 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MSHATFECDD GVVSQDQIGS PLMDKGKSGG SEDGGLVLKK GPWTSAEDAI LVDYVKKHGE 60 GNWNAVQKFS GLSRCGKSCR LRWANHLRPN LKKGAFSAEE ERLIVELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP AELCMQALQD GQQGQTFCRM TNGNKGHHEI 180 LQGSGYEIPD IVFDSFKANH SVLPYTPEIS DISATGLLMK GLASSQCGGL VQPTMPRHKR 240 LRQSASFYPG YGGIFKDAFP SMHQFEDDSR EKLSRAIVHP FPIDHDPDKN PLPFGVVQGS 300 HSFSNGNSST SEPSYEALKL ELPSLQYSEP DMGSWDTSSS PPTLLESVDN FILSPARTGK 360 AESECLSPRN SGLLDALVHE SKTMSSAKNN SPEKSTNSSA LTPGDISSST LDICKSEWEE 420 YGDPISPRGH SATSVFNGCT PLSTSGSSLD EQPHPDTFTA YNVKPEPFNL QSPESKHEIP 480 AHCDLMRPDA LLASDWFGLG SGSLKDQSTV SDSMVSLLGD DLCNDYKQSI GTCTSDQEWR 540 LNSCAWNNMP SACQMPELP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G03183.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067659.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_010067660.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_018715317.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
TrEMBL | A0A059BHZ0 | 0.0 | A0A059BHZ0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067659.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3802 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-123 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G03183.1.p |
Entrez Gene | 104454496 |