PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.G03078.1.p | ||||||||
Common Name | EUGRSUZ_G03078, LOC104454412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20304.5 Da PI: 8.6711 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 4.1e-40 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+l+rkC++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++ Eucgr.G03078.1.p 20 SCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHD 112 6******************************************************************************************** PP DUF260 94 lallkee 100 la ++++ Eucgr.G03078.1.p 113 LAIARAR 119 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.303 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-39 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRAMRMKQAM KGHEPRSSSS CAACKLLKRK CTSTCIFAPY FRSDEPKKFA KVHKVFGASN 60 VSKILVEVPE EQREDTVNSL AYEAEARLRD PVYGCIGAIA LLQRKMLELQ HDLAIARARL 120 ARYTVPAVST SSPSVLMDEN VGMVSFYDMP CCSGVNESFG QSSSQLTQVQ PMNDFGQFPY 180 IF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 15 | 123 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 15 | 123 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.G03078.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067553.1 | 1e-135 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 2e-66 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A059BI25 | 1e-133 | A0A059BI25_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067552.1 | 1e-134 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 8e-67 | LOB domain-containing protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.G03078.1.p |
Entrez Gene | 104454412 |
Publications ? help Back to Top | |||
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